MmuINT0113733 @ mm10
Intron Retention
Gene
ENSMUSG00000038534 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:MGI Symbol;Acc:MGI:1918490]
Coordinates
chr11:97056253-97056623:+
Coord C1 exon
chr11:97056253-97056347
Coord A exon
chr11:97056348-97056527
Coord C2 exon
chr11:97056528-97056623
Length
180 bp
Sequences
Splice sites
5' ss Seq
GTAGTGAGT
5' ss Score
5.8
3' ss Seq
TCCCTCGCCCTCTGCCTCAGGTT
3' ss Score
9.14
Exon sequences
Seq C1 exon
TGCACAACTCCCTCAGCAGTGTCCTGGTTGCCCTCACCACAGAACGGGACCGACTGAGAGACCTGCACCAGGGCTCAGAGCTGTCAAGGATGGTA
Seq A exon
GTGAGTCTCAGGGGCATGGTAGCTGATCAGAGGGAAGGCCCAAGACTAAGGACTGAGGGTCCCTTTGGCAAAATCTGTGCCAGGGCTCGGGGGTTGACAGAGGCTGTCCCTGACTTGGTGCGGGTTGTAGGTGGGGAGGATTTCTCCTTCCCACACCCAGTCCCTCGCCCTCTGCCTCAG
Seq C2 exon
GTTTCTGAGGCCCCGGATGGTCAGAGACGCCTCCACTCACTCTCCATCTCCTCAGACACCACGGCAGACTCCTTCAGTTCCCTGAACCCGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038534:ENSMUST00000090020:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.406 A=NA C2=0.760
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAACTCCCTCAGCAGTGTC
R:
CTCCTCCGGGTTCAGGGAAC
Band lengths:
189-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types