HsaINT0118701 @ hg38
Intron Retention
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr17:47816107-47816482:-
Coord C1 exon
chr17:47816388-47816482
Coord A exon
chr17:47816203-47816387
Coord C2 exon
chr17:47816107-47816202
Length
185 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
CCCTCACCCTCTCCCTGCAGGTC
3' ss Score
14.18
Exon sequences
Seq C1 exon
TGCACAGCTCCCTCAGCAGCGTCCTGGCCGCCCTCACCATGGAACGGGACCAACTGAGGGACATGCACCAGGGCTCAGAGTTGTCAAGAATGGGG
Seq A exon
GTGAGGCCTGGGGGACAGGGTGACTGGTGCGGGGAGAGGGCTTCAAGCTGAGGACTGCCAGCCTGGGGTCCGATAGCAGATCTGGGTCAGGGTGGGGGGTTGGCAGAGGCAGTCTCTGCAGAGATGCGGCAAGGTGGGGAGGACCTCATCCTCCTGGCACCGTGTCCCTCACCCTCTCCCTGCAG
Seq C2 exon
GTCTCTGAGGCCTCCACTGGCCAGAGGCGCCTCCACTCACTGTCCACCTCCTCCGACACCACGGCGGACTCTTTCAGCTCCCTCAACCCTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025:ENST00000007414:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.539 A=NA C2=0.932
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTCAGCAGCGTCCT
R:
TCAGGGTTGAGGGAGCTGAAA
Band lengths:
180-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development