RnoINT0105829 @ rn6
Intron Retention
Gene
ENSRNOG00000009473 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:RGD Symbol;Acc:1309141]
Coordinates
chr10:84991415-84991784:+
Coord C1 exon
chr10:84991415-84991509
Coord A exon
chr10:84991510-84991688
Coord C2 exon
chr10:84991689-84991784
Length
179 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
TCCCTCACCCTCTGCCTCAGGTT
3' ss Score
8.08
Exon sequences
Seq C1 exon
TGCACAACTCCCTCAGCAGTGTCCTGGTTGCCCTCACCACAGAACGGGACCGACTGAGAGACCTGCACCAGGGCTCAGAGTTGTCAAGGATGGCG
Seq A exon
GTGAGCCTCGGGGACATGATAGCTGATCAGAGGGAGGGCCCAAGACTGAGGACTGCAGGTCCCATTGGCAAAATCTGTGCCAGGGCTGGGGGTTGACAGGGGCTGCCCCTGAGTTGGTGCGGGTGGTAGATGGGGAGGATTTCCCCTTCCCACACCCAGTCCCTCACCCTCTGCCTCAG
Seq C2 exon
GTTTCTGAGGCTCCGGATGGTCAGAGACGTCTCCACTCACTCTCCATATCCTCAGACACCACAGCAGACTCCTTCAGTTCCCTGAACCCGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009473:ENSRNOT00000067665:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.406 A=NA C2=0.812
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAACTCCCTCAGCAGTGTC
R:
CTCCTCCGGGTTCAGGGAAC
Band lengths:
189-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]