GgaINT1020432 @ galGal4
Intron Retention
Gene
ENSGALG00000028934 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr27:3904390-3904685:+
Coord C1 exon
chr27:3904390-3904482
Coord A exon
chr27:3904483-3904555
Coord C2 exon
chr27:3904556-3904685
Length
73 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
GAGCTCCCTGTCCCCTCCAGGTG
3' ss Score
9.92
Exon sequences
Seq C1 exon
CCCTCAGCTGCCACGGAGAGGCCCAAGAAGGGTCGGAGGACCACCAGGATGTGGTGCACTCAGAGCTTCGCCAAGGATGACACCATCGGACGG
Seq A exon
GTGAGGCAGGTGCAGGCTGTGTGTGTGCCGAACCCGGGGCTGGATCCCTTACTGAGCTCCCTGTCCCCTCCAG
Seq C2 exon
GTGGGGAGGCTGCACGGCTCCGTCCCCAACCTCTCACGCTACCTGGAGCCCAGCCAGGGCCAGCTGCCCTTCAGCCTGCCGCCTGAGTACAGCCAGCTGCAGCGCAGCTTCTGGGTGTTGGCGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028934:ENSGALT00000043335:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.645 A=NA C2=0.295
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATGTGGTGCACTCAGAG
R:
CTTTCTGCGCCAACACCCAG
Band lengths:
179-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]