HsaINT0118720 @ hg38
Intron Retention
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr17:47816563-47816872:-
Coord C1 exon
chr17:47816780-47816872
Coord A exon
chr17:47816696-47816779
Coord C2 exon
chr17:47816563-47816695
Length
84 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
CCCTTCCCCTTCACCTACAGGTT
3' ss Score
12.26
Exon sequences
Seq C1 exon
GCCTCAGTGACAACCGAAAGACCCAAGAAGGGGAAACGGACAAGCCGCATGTGGTGCACCCAGAGCTTTGCCAAGGATGACACCATTGGACGG
Seq A exon
GTGAGGTCGGGCATGCACCTCACGTAGCTGGGGCAGGATGCTCTAAGGAGGCCGGCCCCTTCAGCCCTTCCCCTTCACCTACAG
Seq C2 exon
GTTGGTCGTCTCCATGGCTCTGTTCCCAACCTGTCTCGCTACCTGGAGTCTCGGGACTCCTCGGGCACCCGTGGGCTGCCACCCACAGACTATGCCCACCTGCAGCGCAGCTTCTGGGCCCTGGCCCAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025:ENST00000007414:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.645 A=NA C2=0.450
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGGGGAAACGGACAAGC
R:
CTGCAGGTGGGCATAGTCTGT
Band lengths:
174-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development