RnoINT0105847 @ rn6
Intron Retention
Gene
ENSRNOG00000009473 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:RGD Symbol;Acc:1309141]
Coordinates
chr10:84991015-84991323:+
Coord C1 exon
chr10:84991015-84991107
Coord A exon
chr10:84991108-84991190
Coord C2 exon
chr10:84991191-84991323
Length
83 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
3' ss Seq
CCCTTCGTGTTCACTGTCAGGTT
3' ss Score
9.5
Exon sequences
Seq C1 exon
GCCTCAGTGACGACCGAGAGACCCAAGAAGGGGAAACGGACCAGCCGCATGTGGTGCACACAGGGCTTTGCCAAGGATGACACCATTGGACGG
Seq A exon
GTGAGATGGGGTGCTGAGCCCCAAGTTGCAGGGACACAATGCTCTGAAGGAGGCGCCCCTTCACCCTTCGTGTTCACTGTCAG
Seq C2 exon
GTTGGCCGTCTGCATGGCTCTGTTCCCAACCTGTCTCGTTACCTGGAATCTCGGGACACTTCTGGCCCACGTGGCCTGCCACCTCCGGACTATGCCCATTTACAGCGCAGTTTCTGGGCTCTGGCCCAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009473:ENSRNOT00000067665:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.645 A=NA C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAAGGGGAAACGGACCAG
R:
TGCGCTGTAAATGGGCATAGT
Band lengths:
179-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]