GgaINT1020465 @ galGal4
Intron Retention
Gene
ENSGALG00000006208 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr5:11440639-11444552:+
Coord C1 exon
chr5:11440639-11440672
Coord A exon
chr5:11440673-11444458
Coord C2 exon
chr5:11444459-11444552
Length
3786 bp
Sequences
Splice sites
5' ss Seq
TAAGTGGAA
5' ss Score
-13.25
3' ss Seq
AGATGTAAAATTTCTATCACGTT
3' ss Score
-3.46
Exon sequences
Seq C1 exon
CTCCTATTAGACAAAATAACTGAGGGCATATTAA
Seq A exon
GTGGAATGATTGCCATCCAAGGTATACTTTACCATTTTATTAAGGATTTGCTATGTCACCAAATAGAAGATAGACTTCACTGGGATGCACACGGTTATTTTCAAATGACATGACAAATCCTTTTGAGGAGCAATGTCTGATATAAGAACCTTGACTCATTATCTGTAAACTGTGTATCATTCTTTTGTGTGAGTGAACTGTACACAGAGTACAGTAAGCTCCTATTACTGTTTGCTGATGGGGGAATTTAACAAGTATAAAAATGGGAAGCATGTGTTGGAGGTGGCTGATTAGCTTCCTGGGTAGCATAAGGCCTTCATGCCATTACACTGGTGAAATCTCATCAGTAATCACTATTACTGAGCTACGGTACTTTCTGTAATTGGAATAGCAGCACTCTAGGTCTGACTGGCATGAAAGTTAATGTCTAAAATCAGTAGAGAGAGAAAGGTGTGTTTCCTTTAGGGATCGAGAGAGATTTAAATGGTTTTAGAGCATATTTTTGTCATTCTTCCTTATGCCCTAATGATAGTGTGTATTAAGATCATAATTTATATGCAAAGGTAGCGAAAAGAAGCAAATATATATATATATATTAGCTAGGTTTAGTAATACTTGATTAATCTCTTGACTTGGTCTTGAGATCATTGTAGTTCAGAACAAGGTTCTGTGCCTGTTTAAATTCCCCTTTACTTTCTGCCAAATCTCCATTCAGTATAAGCTTTTCAAGCAGGAACTATTTTTTAATTTTATTATTATTTTTGTGGTGACTATCACAGTTCATCAGCTTCGTCTTTGAGCTGCTTAGGGATTTCAGAAGTGATGCTGCCAACAGTGAAAAGTTAAAATATGATGAACGATTAAACTGAAATTTGCATAGTGCTGTAAAGGTATTTTCTTATAGTTAATATTAAAGCATATATTTCACTATATTTGACAGATTTACTGAGATGTCTCAAAAATTTTCAGTACACTGGAAATCAATTCATGGAATATATTCAAATCTTACTGTGGTGATCTGGGCTTTTATGCAATTTACATGCTACAAAAAAAAAAAAACCAACCAAATACGACTTGGCATGTCATGTTCAATTCCTTTGCATCTACAGACTAGAAAATTAAATGTCCATCTACAGCTCTCCTTAGAAAACAGTTCCCATGACAAGGTTCCCAATTTCATCTGTTGTCTGTCTTATGTTCTGCAGAAAAGCATGATTTTGTTAGTTCTTTGCAGGAAGTGGCATTCAGGAACAACAAATTATGTGCAAGTTCTCTCTGTTTTCTCCCAAGTCATGCAGCACCTGCAAACTCCGTGAACTTAATCTGCAGGAATACTTGAGGGAAATGTGGCCATTGTTTCATAAAAGTCTAAACTCATGTAAAAAATAGGAAAAAGTATATAAATTCCATGCTTACAAGTGTTAATTCAAGATCACTCTTCTGTTAAACTCAGAAACTGACATTCTTCATGAGGTTTATGTGTGTTCTCTACAAAGATTGTGTCTTTGTTTGGATCTTTTTTTTTACTGTTAATAGTGAGGCTTATGGCATGAGTTAGAAGTTATGGGTCTGGCTGTGTACTTAGCTTTGGGTAGTCTGATGAATGAGACTTCTTAGGTTGCACTAGAATATTCTGTGAATGCTGGTCCATATTAGGGTGATGATCACCTGTTCCAGTAAATCTCGGATATATTGTCTTTTTGTCATACATCCTCTTCATGTGTCATTAAACCTTTTCACTTTGACCTCCCTTTTTATATGTCTGTCAGCAAAATGTACAGAAATAATTCCCTTCCTTCATTAAATATATGTAATTTAAGTTGGTTGCACTAGAAGGGCTCAAAGATTAATTCAGTGAAGTGTACTTAGTTTTATATAAGAATGTAATTATATAAATGCATTTGTTACTGTCACTGAAGTCGTGTTTTTGAAAATGGTGACAGTTCAAATCCTTGGATAGAACACCACTGTTGAAAGGATAACACTAGATGGCAACATGCACACTCTTCAACTGTAAGAAGGATGTAGGCAGCTGAGTTTGAGTTATATGTCAGTTTTAAGAGAATTATTTTTACTAAGAAGAAAGATATTCATGGTTAATAATGGCAGAAAACTAGCTACCTATGAGTGCAGATGTCCTAAATTTGCAGGGAAAAAGCAATTTCTTAGGATCTGCAGGGAAGAATGTCTTCAGAAAGATGTAAAAGGGCTAGCCTCTTTGCATAATAAAGATACACAAAACGTAAAAGCGAAAGGACTTAAGAAGACGGAAAGTGGAAATTCTTCGTAAGCAGTAATCATTTTCTTTCTGATCATTAACATAAACATTGTTCAAGTGCGGTTGGTCTTCATAGACTCTTAACCATATAGGTCTAAAATTGGTCTTACTACTGTTGTATATTATGGTAGTGGTCTCCTCTATGTGTAGATGTAAGGGAACTTTTGCTGCCTTGCCTTGGCTGCTACAGGACAGGGCTGTGGTGAGTTGTAGTTCAGGCACCGAAATCAGATGGGTTGCTTAAGCCACACAGACTTGGAAGAGCCTCTTGGCTATGCATCTAGCATAGACGTGGGAGCCATTCTGTGCACAGATGGGACATGGTTGTGGTGAAAAAGAAGACATGGCATTTGAACGTGCAAGTGTGTACACCCATGTTTGTTATCCATACGATTACCAAGAATTCTCTTCCCTAAAGTTTTATATTCAATCTGTAACTGAGTGCTTATTTTTCTCCTTTACATTCACTCTGAATAAATTAACGAGCATTAGAACTGTAGCTGATCCTTCTATTTATTTCCACTTTGAAGTTGAACTCCTTCTCTATCTAAACTTGTGCTTTGAGTTTCAGTTATCTGGGCTTGAAGCATTTCAGAAAACACTATTTTCCTGCCTTAGATATGCTGAAGGCAAGTTGGGTAGTTGCATGTGATTTTTTGGGGGGGAGTTGTTTTTTGGTTTTTTTTCATTTGTCATAGTGTTTGATTTTTTAAGTATTTTGTTTGGAGAAATGTTTTCATTTTTTTCAAATGTGATCATGTCTGAGTTGCTTTCATCATTGTAGGAGCAGTTAGGCATTTCAAGAAAACAATTTGAACCTCACAACATTTCAAGTCTGAAATTCTATCTTACACTCCTTTTGAGAAGATGGGATGTGAAGAGACATTGTGGTAAAGAGCCTAAATTGGCCTCATACTAGATTATTTTATTGGGTTTGTTGTTTGCTTTGGTTTTAAAAATGCAGTTGCATCATATAGGTTATGTACCTTCTATCACCTGATCTTACACAGCGGTCAAACAACTTCTATGATACACAGTGTTAGTGCATTGGTGTGATACTGGTGCTTTTAGTTTTGATTGTAATAGCAATAATTGTTCAGAATCTTAATTTTTCATCTTATTTGAATAACTCAAAATACAGACTTATTGTTGACACAGTTTTTAAAACATAAGAAAGCAGCTCTGACTTACCTGGCTTTATTTTCAAGGGATTGTAATATACAGTAAATGTGAAAAATTCAGTGGCATTTTTTATAACTGCTAAGAACAAAACAGGCTGCCGAGTACTCTGTACTGTGCATAAAAATAAACTGTTCATTTTAAAAAGACCTTCACAGTTTGAAAAACACTACTACTAATTTTGTTCGTAAAGAATGCTGGTAGAAACAGTGAGTGTTCTAGAGCTGCAGTGAACTTCAGCTATCTTTCTCGGTGCCGTGTGTGTTTTTCTAGAAATAAATGAGATTAACAGATTTTGGTTATTTTTTCAGATGTAAAATTTCTATCAC
Seq C2 exon
GTTCTGCATGTGAATGGCATTATGATGCCTGTGCAAGCCCTTGTTTCAAAACCTGCAGGGATCCTTTGGGAAAAAACTGTCAGACAGTACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006208:ENSGALT00000010023:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0182612=TIL=PU(50.0=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]