DreINT0002596 @ danRer10
Intron Retention
Gene
ENSDARG00000068460 | BX842701.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1Q7R5]
Coordinates
chr7:39213291-39213790:-
Coord C1 exon
chr7:39213512-39213790
Coord A exon
chr7:39213409-39213511
Coord C2 exon
chr7:39213291-39213408
Length
103 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
TTTTTATTATTTTATTTCAGGTG
3' ss Score
11.17
Exon sequences
Seq C1 exon
ACTCATCTCTGGTGTCATTTGAGGCGGCAGACAGACCCAACTACTTCTTAAAAGCAGAGCAGGGTAGCCAACTGAGACTTGGGAAGTGGGAAGATACACCGGCATTCTGGGATGCAGCTACATTTGTCCTTCATAGAGACACTTGGATTCCAGGCTTTGATTCACTGGAGTCACTGGCAAGACCTGGATTTTTTCTGCATTTCATGCTGTCCAGACTTCAGCTACAGAAATACAGTCACTCAGATCGGTACCGCCGAGCTACTCTATTCAAACTGACAG
Seq A exon
GTCAGACTGTGACAGATAATTAATGATACTTAGTTATAGTGACTCAGTAATATTATAACTGCCTAACTCATTTTTTCCCATAATTTTTATTATTTTATTTCAG
Seq C2 exon
GTGCCATACCACATTATCCAATGGGTCCTCGTTGTCAGTGGAGGTTTGAGTCATGTGTGAGACCATGCTTCAGGACCTGCAGTGACCCATCAGGTCTGAGCTGTACCAGCATTCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068460:ENSDART00000083804:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF052708=AbfB=PD(69.7=97.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGGGAAGATACACCGGC
R:
AACCTCCACTGACAACGAGGA
Band lengths:
243-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]