HsaINT1025823 @ hg38
Intron Retention
Gene
ENSG00000188162 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr11:17605857-17608413:+
Coord C1 exon
chr11:17605857-17606135
Coord A exon
chr11:17606136-17608295
Coord C2 exon
chr11:17608296-17608413
Length
2160 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGC
5' ss Score
6.03
3' ss Seq
TGCCCCATCTCACTTTCTAGATG
3' ss Score
10.1
Exon sequences
Seq C1 exon
ACCCAGATGTGGTGTCCCTGGAGGCAGCAGACAGACCCAACTTCTTCCTTCACGTCACAGCCAACGGGTCTCTGGAGCTGGCTAAGTGGCAGGGCCGTGACACCTTCCAACAGCATGCCTCCTTCTTGCTGCACCGGGGGACACGGCAGGCAGGCCTGGTGGCCCTGGAGTCCCTGGCCAAGCCCAGCTCCTTCCTCTATGTGTCGGGCGCGGTGCTGGCCCTGCGGCTGTACGAACACACAGAGGTGTTCCGCCGGGGCACACTCTTCCGCCTTCTGG
Seq A exon
GTAGGCGACCCCCTGCCATTGCCCTCGGCCCTTTGGCCCTCTCAGTCCACTGCTCTTCCCACCCTGTCCCCACTTCACCCTTCCAATTACCCCTAAGAAGCAGAATCCTCCTTCTCCTGGCACAGGGGCCACATGGGTGCCACCCTGAGATGAGAGGTGGCCCAGCCTCCATGTTGACAGCTTAGGGAGCCACGGACAGTGTGCTTGGGGTCCAGCCAATTTCCTGGGTCCTGCCTTCTGCCACAGGCCAATTACACTGTCTAAAAATATAGCAGCCTTTGTGGAAGTGAGGGGAGGTGTGATCCTGGCTGCAACATGCGTAGCCGCTGGCTCAGTTTTCTTGCTGATGAGGTCACATGTCTGCCCCATGAGTTCAAAGACTGCACAAGGGGGATAGGTCTGGGGGCCAGCAACCTCCTCTCTCAATGGAAGGCCCAAGCCCCTGGACAGGGATGGGGCAACTCCCCGACCTTCCACCAACGCCAAGGGGATCCAGGGCCTGCCCTGCCAGGTGTGTCTGTCCCCAAAATATTGTTCTCTGCCTAAACCCTGGAGAAGGCGATCATAATTTCTTCACTGTTTTCTCTGTCTTGCATGGGGCTTGGGGGTACCTGTGTCTGTGGGTGGATCCATTTGCATGTACACGTATGTAAATGTGTCTTCAGCCAGCCTCCTTATTTCATCACCCACCCCACCCAAGCCAGGGCTGGGTGAGCTCATTCTTCCCTTCAGCGGTCAGTTATCGAGTCTGCCCTTAAACTTGACATGGGACAGATTTATCACTGGCCATGATGACAAGACTTGCTCATGATGGGAGTATTTGTGTCCCTCTCCGGAAGACACTAGGGCAGAGTGGCATGAGCCCAGGCTTTGAAGCTGGACAGCCTTGAGTTCAAATCCTGACCCTGGTCCTAGACCCTTGGAGGAGAACCCTCATCTCCTTGACTTGGTTTCTTCACCTGTAGAATGGGGATATTTGTCTCGGAAGTGTGCTGTGAGGACTGGCTGTGTCTCGCGGGCTTTGCCTTGTGCTGGCACATAGTAGGTGCTCCCCAAATGTAAGTTAGACTTTTGGAAAAGCAGGTTTCTTTACAGCTGGCAGCAGTGTTCAGGTTAGGGCGTCTGGAGGAGCTGCCGGTGGGGGATGCTCCCTGGAGCCTGCTTCGGAGCCTACCCACACCTCCCTGTTCAGGCTGTGTGTTCAGAAACTGGTCACTTGTGCCAAGGTAGCCTGGGGTCTACTTGTCTGCCTCCAAGCCCCCCATAGGCTGCAGACTTTTCCCTCATTTGCCAAGGTGCTAGCCACAGGGCCTCTTTTGAGAACATCTCCTCTGAAAACCTTTCACTTTCTCAGCATCATCTGTGCCTGGGTTTCCTCTTCTCTAAAGTGGGGGTAATAATAGCGCCTACTTCCTAGGACGATGATGAGGTTGAATGAGTAAATCCGTGTGAGATATTTTGGGTAGCGCCCAGTGCTGTTTAAGAGTTAGCCCAGCCGCCAGGGCAGTGAGGGTGGTGCTCACACGACCTGCACTCTCAGGCCCTTCAGGGGCCCTCTGGGAACAGAGAGGGCTGAGTCGGGGGAATAACACCTCCCTTGCAAGCTCTCTGGGGCTAGGTGCCCAGGAACGCTTTGGGCTAGAGGGGAAGGGATCCCCCAGTGCCTCCCCTCACCCTGCAAAGGAGAGCCTCTTGCCTCCATGGAGGTCTGCAATAGCCCTGCTAGAGACAAGGCAAGGAGGAGGTTACTGTGTCCTGGGATGCAGGGCAAGCCTGAGCACCAGGGTCCCAGAGGGGCAGGGTGGGTGGCAGGGCATCCCAAGGGAGAGATCAGGGGTCCAGGCCTCTTCTTCGGTCACCCTTCGAAACCTCACTCCAACTGCCGGGGCCAGAGCTTCCCTGTCCTCAGTTCTTCCCTGTCCTCAGTCCTTCCCTGTCCTCAGTCCTGCATTCAGCTCCCAGAGCCCCGTCCCCAGGATCCCCCAGGCACTCACCCCAACCACCATGAACGCAGTTTCTCCTTAGTGTGGTTTTTTCCCCATTTGCTTTCCCTGCATGGGTCCATTTGTCCCCTCCACAGGATGGGGGGCAGGGCTGAGCTCTGGGACTCCCTCTGTGTCTTCACCTGACCCAGAGTTGCTGCCCCATCTCACTTTCTAG
Seq C2 exon
ATGCCAAGCCCTCGGGGGCTGCCTACCCCATCTGCGAGTGGCGCTACGATGCCTGTGCCAGCCCCTGCTTCCAAACCTGCCGGGACCCACGGGCAGCCAGCTGCCGGGACGTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188162:ENST00000342528:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF052708=AbfB=PD(63.4=97.9)
A:
NA
C2:
PF0182612=TIL=PU(49.1=67.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains