GgaINT1021063 @ galGal4
Intron Retention
Gene
ENSGALG00000011982 | PDE5A
Description
phosphodiesterase 5A, cGMP-specific [Source:HGNC Symbol;Acc:HGNC:8784]
Coordinates
chr4:54089300-54090218:+
Coord C1 exon
chr4:54089300-54089437
Coord A exon
chr4:54089438-54090150
Coord C2 exon
chr4:54090151-54090218
Length
713 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
ATATCCTCTTGTTTTTTCAGGAT
3' ss Score
11.76
Exon sequences
Seq C1 exon
GTGCTTCTTGATCTTGCCAGCCTTATTTTTGAAGAACAACAGTCTTTGGAAGTAATTCTGAAGAAGATAGCTGCCACTATAATATCCTTCATGCAAGTGCAGAGGTGTACCATCTTCATAGTGGACGAAGATTGTACT
Seq A exon
GTGAGTAGGATTTTTTTTATTTAAAGGCAGAAATGCTTATTCCCTAGAGGAGGTGTGAGCATCCTGTAGACTGCAGAAAAGGAGAAGGATTTTATTTTGTAATAATCTCTCTCACCGTATTTAAGAGAGTCACTCTGATACAAGTGATTCTGATAGGAGTCACAAGTCACTGATACGAGAGTACAGAAGAGGAATTTACATAATGTATGTATTCACATAGTCACACTGTCTCTGCAAGTCAGCCAAACTCCAGCACTTACTTTCCAGTCTGTAGTTGGAATCTTTAGCGCAGAGAGAATCTAATTTCTCCCTGCAATTAGGATTTTTAACTGTAGGAAAAAAACCTATGTGAAAAGCAATACAGATTTGTTGAAATGTTTAAAAGGCATTGGTGTCCTCATCTCCTCAAGCAAAGCAGATATTATGCACTCTTTGTGCATTCACTTGGATGAATGTTCAAATCTGGAATTTCCAGAGATAGATGGTACAGCTTATATACTGGCATTTCTCAGAGTGATCAGTAAAGATTCAAGATACTTCAGTATATATTTTTGTCATAGGATTCTGTACTGTTGCTGCTTGATATGAAATTTTATATCTACATTTATTACAGAAGAGATATTGATAATAGCAACAGGCTTTTCACATGAATACTACTACTCTAAGTTATGACATCCATATGTATAAATTATAATATCCTCTTGTTTTTTCAG
Seq C2 exon
GATTCATTTTCTAGTGTTTTTCATATGGAAGCTGAGGAATTAGAAGATTCAGCAGAAAACCAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011982:ENSGALT00000019550:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.174
Domain overlap (PFAM):
C1:
PF0159021=GAF=PU(19.7=67.4)
A:
NA
C2:
PF0159021=GAF=FE(14.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTTCTTGATCTTGCCAGC
R:
CTCTTCTGGTTTTCTGCTGAATCT
Band lengths:
206-919
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]