RnoINT0108888 @ rn6
Intron Retention
Gene
ENSRNOG00000014443 | Pde5a
Description
phosphodiesterase 5A [Source:RGD Symbol;Acc:620995]
Coordinates
chr2:226961148-226963787:+
Coord C1 exon
chr2:226961148-226961285
Coord A exon
chr2:226961286-226963719
Coord C2 exon
chr2:226963720-226963787
Length
2434 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TGCTGCCACTCTGCTTTCAGGAC
3' ss Score
10.49
Exon sequences
Seq C1 exon
GTATTACTTGACCTTGCTAGCTTAATTTTCGAGGAGCAGCAGTCATTGGAAGTAATTCTGAAGAAAATAGCCGCCACTATTATCTCCTTCATGCAGGTGCAGAAGTGCACCATCTTCATCGTGGATGAAGACTGCCCT
Seq A exon
GTGAGTACAGACAGGGACTTCCGGTTTTGCAAAAAACGGACACTTCTCTTCCTTGAAAGTGTATTCTGATTTCAAACGCTATTTTTCCTTAGAACACACCCCAGCTCCCAGTGCCTATACATATTAATGCAAAACCAATACAAGGGTGAACTGTTTATGAAGTGGGTTGGAGGCGAGGGTAGCAGAAACCTTCAGTGTCCCGCCACTAACCAAGGGTTTTTTCTCTGAGCTACCCCTTGCCTGTGGCTGCTCTGTCTTAATGGGAAAACAACTTGTATTGATTGCACCATGCAGACTAAACCATTAAGAGCTGAGGTGCCTTGGTATCTGAAACAGGTAGACTCCCATTCTGAATGTGTGGAGTATAAAATTTTCTGTCTTACCAGAAATTATTTAGGAAAATTAGCAGAAGGTGTAGGCAGGTGGTGGGTAGGAGTAAAGGAGTGTTTAAGTCCGACATCATTTCCAACGGCAGGAAATGACCCACCATTCCAATACACAGATCTTCAGTCCGTTTATCGCTATTGTTAGGAAGCTTTTCCGGAAGAGAGGGTTTGCTCGAGAATCAGACCACTGGCCTGCCACAGTTTTGTCTCGTGCAGATTTTCTCTCTTCTCACTGTCTGAACCGTGGAATATTCCTTGTGGTGGAAGTTGTTCTTCCACTCGTCTAAGAGGAGACGACTCATTGGCAGGCTATTAGGAAAAAAGAAAGCACTGTCACTTGAATAGGTCAATTATAATTCATATACGACATTTGAGTTGACATTTCTGGTAGAAGTAGACTAATAAAAGACATTTGGTCATACTAAACTTTTAATTGGCTTGGATATTTAGACAACTCACTATCCTCTTAATATGCATGATAGGATGGATGCATTGATTAGTGTAAAATTCATATTGTTTATCAAATAAAAATTCATTGTATCAGAACAATACTCAGTATTTTCACGGGTAGCTACTATTTTATATTTCTATTCACTTCTAAAATATTTAATAAAAATGATTACAAGGTACTTGCTAGCTTTTTAAAGATTATATCAGAATTCATTAATTCAGTATACAAACTTGTGATTTTCCTTCAGCGATCTGTTCTTTAGCATTTAACTTTTTAATTTTTTCTATCGAAGCATTCCTTTTTACAAATTTAAATCTCACTTTATGAACATTCTGTGGAATTTTTAACAGTTAATACCTCTCATGGCAACAAGTTGATTTAGATCAGTGTGGTTTGACTCTCAGCTCAAGAAGATGGCTAAGAATATGTTCTGACCTCTTTTGAAAAAATAAGTCGTTGAGTTTAGAAAAGAATTTAGTTGAGTTACTGTTATTTATGGATTACAACTACTTCAACACAAGTAAAAAGAAAAATGTAAGTTCCCTCAAAATACACTTGGCTTTTCCATTCCCAAATTATACTTTTTATTGTTTTGTGCTTGTGTTTCCTTCCAATATCTCGTCATTCAATCGTAAGTACAGCATGGAGCACTGATATCACTAAAGTCTTCATAATTATTTTATTTTCCTTGTTAAATGTCGCCAAATGGTATATCTCTTTAGGAAAGAACTCTATGGGCTGGGGAAATAGCTGAGCCAGCAAAGTCCTTGCCTTGAAAGCTTAAGAACCCAAATTTGCTTTCAGAAGCCACATAGCAATACCAAAATGTTTGGGGCAAGCTTGTAACTCCAGTGCTTGGGAGTCAGAGACAGGAGGATCCTCAGGGCTCTACTGTCCGTCAGGTCAGCCTAACTGGTGAGCACCAGGCTAGAGGATATCATTCCTGAGAATGATACCAGAGGTTACCCTCTGGCCTTTCTCTCTCTCTTTCTCCCCCTCCCCCTCCCCCTCTCTTACACACACACACACATACACTTTCTCTTTCTTTCTTTCACACACGCCCTCTCATACAAACACACTCTTTTGCACAAACACACATATACCACACCCTCCCTCTCTCTCTCACACACACACAAACACACACTCACACTCTCATGCACACACATTACATATACACATACTCATGAACACACAGAGTTATATACATACAAACACATATGCACACTCACACACACCTGTGAAGGCATATGCACACAAAAACACACTCATGAACACATATGCACATGAATACACACACATACATGCACAGACACACATGAACATATACATAAAAAAGGCCTGAGTTTTACAAGCAGCAGAAGTGTCTACTTGAAAACTTCCTTCGGGTAAAATCAGAAGTAATATGATCTTTCAATAATAGAAAGCATCTTTAAGGATGTTGGGAATTTAGTGCTTGAGTCTATTTGGTCCGAGAATAAGGGAAATAGGTCTGTGCACTAGCACCCTAGTGTAGCACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTGGTTTCCATGGTTTTGTCTCAACGATGCTGCCACTCTGCTTTCAG
Seq C2 exon
GACTCGTTCTCTCGTGTGTTTCAAATGGAGTGGGAGGAAGTAGGGAAATCCTCCGAGCCTTTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014443:ENSRNOT00000019638:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF0159021=GAF=PU(19.6=67.4)
A:
NA
C2:
PF0159021=GAF=PD(23.3=43.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]