Special

GgaINT1021184 @ galGal4

Intron Retention

Gene
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr25:410467-410741:-
Coord C1 exon
chr25:410649-410741
Coord A exon
chr25:410572-410648
Coord C2 exon
chr25:410467-410571
Length
77 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
CATGCCCTCTCCCCCAACAGTTT
3' ss Score
10.71
Exon sequences
Seq C1 exon
GATGGTGCTGAGGACTGTGGCACTGGCACTGCACGCCTGCCTCCTGGCTGCCCTCCACCCCAGCGACCCCAACGTCTGCAGCTACTGGGAGAG
Seq A exon
GTAGGAGCTGTGCTGGGGGCACTGGGATGGGGTCACCTATGGGACCACCCACCACCCCATGCCCTCTCCCCCAACAG
Seq C2 exon
TTTTACAGTAGCAGTGAAGGAGTCATACGCCAAACCCCACATTGTGACCTCCACCGAGCCCTGCACTGGGACACCAGGATTGCCACAGTCCTGCCCGCAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028622:ENSGALT00000045144:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion (1st CDS intron)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTGCTGAGGACTGTGG
R:
GACTGTGGCAATCCTGGTGTC
Band lengths:
183-260
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]