HsaINT0122921 @ hg38
Intron Retention
Gene
ENSG00000187800 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr1:156903918-156904852:+
Coord C1 exon
chr1:156903918-156904027
Coord A exon
chr1:156904028-156904747
Coord C2 exon
chr1:156904748-156904852
Length
720 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCCTGTTCCCTGTCTTGCAGCTT
3' ss Score
11
Exon sequences
Seq C1 exon
GCCTCTGCAATGTCACCGCCTCTGTGTCCCCTCCTTCTCCTGGCTGTGGGCCTGCGGCTGGCTGGAACTCTCAACCCCAGTGATCCCAATACCTGCAGCTTCTGGGAAAG
Seq A exon
GTGAGAGGGCCCCTGCTGCACCTTGAGGGCACCAAGCCCTAGCTCCCGATTGTCCCTATTGTCCCTACTGGGGTCCTTTTCTTGGTCCTTCCTTAATCTCCTTCCTTCTCTCTAGTCTCTCCCCTCCCGCCTATTTCTCTGTTTCTGCTCTCTCTACTCCTCTCTATGGGTTGCCTTTGACTCCAGCCCCATTTCTGACCTTGTCTCAGTCTCTGAACCATCCTTTCTCTTTCCCCGTCCCTTAGTTCCTGTGGGAGGCCAACTTTGGAACAGAGCGCAGAGTGGGAGCCATTCGTTGTGGAGCAAGCAGAGGGGCTGGCCCAGGGGGAGCAAAGGAAACAGGGCGGGGAGAAAAGACCCAGGGCAGAATATAGCCGGAAATACTTCAGCCCATCGCCGCCAGCTGGGCCCAGGAGTCAGTTCTCACTCACCCTTTCCATACAGGGAGGAGAGGGCAGGGAGAGAAAAATGGAAGGCTCCGGTCCAATAGAGTGGGAAGGGCGCTCTGATGGAGGGTATCCCAGGAACCTTCCAGTTCTGGGAGAAGCCTCCAGACTTGAGAGGTGGGACAGGATGGGGGTCCCATCCTAGGCTACGAGAGCAGCCCCAGCGTTGGGCTGTGGATTCCCCACTGTGGCCAAGCCCTCATGGCCATTTTCCCGTTGTGGCCGCTCAGGCCTCCTCCTGCCCTCGGCCCTGACCCTGTTCCCTGTCTTGCAG
Seq C2 exon
CTTCACTACCACCACCAAGGAGTCCCACTCCCGCCCCTTCAGCCTGCTCCCCTCAGAGCCCTGCGAGCGGCCCTGGGAGGGCCCCCATACTTGCCCCCAGCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187800:ENST00000338302:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.146
Domain overlap (PFAM):
C1:
PF075468=EMI=PU(18.0=26.5)
A:
NA
C2:
PF075468=EMI=FE(70.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGCAATGTCACCGCC
R:
GTGGGCTGGGGGCAAGTAT
Band lengths:
214-934
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development