GgaINT1021188 @ galGal4
Intron Retention
Gene
ENSGALG00000028622 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr25:410125-410571:-
Coord C1 exon
chr25:410467-410571
Coord A exon
chr25:410226-410466
Coord C2 exon
chr25:410125-410225
Length
241 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CGGCTCTGTTTTTGGCACAGGGT
3' ss Score
6.97
Exon sequences
Seq C1 exon
TTTTACAGTAGCAGTGAAGGAGTCATACGCCAAACCCCACATTGTGACCTCCACCGAGCCCTGCACTGGGACACCAGGATTGCCACAGTCCTGCCCGCAGCAAAG
Seq A exon
GTGAGAATTGAGCCAAGATCCCAGCAAAGTCCCCCCCCCAACCCACCCCACTGCACAGAGCATCCTGGTGCCCAGTGCAATGCCCCCCTGCCCTGCCGTAGGGCTGTCCCATGGCCAATGGAGTGATGTCCCATACAGCTAATGGGGGCTGACCCATTGGGTGGCACCCCATGACTGAGGGGGGAGCTCACATAGGGGTGTCCTCCCCCACCTCACCCTCACGGCTCTGTTTTTGGCACAG
Seq C2 exon
GGTTGTGTACCGCACGGAGTACCGACAGGCGGTGCGCACCGACTACCGCCGGCGCTACCAGTGCTGCCTGGGCTACTATGAGAGCAGGGACGCCTGCGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028622:ENSGALT00000045144:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTAGCAGTGAAGGAGTCA
R:
AGGCGTCCCTGCTCTCATAG
Band lengths:
196-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]