MmuINT0117741 @ mm9
Intron Retention
Gene
ENSMUSG00000028073 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87563016-87563503:-
Coord C1 exon
chr3:87563399-87563503
Coord A exon
chr3:87563117-87563398
Coord C2 exon
chr3:87563016-87563116
Length
282 bp
Sequences
Splice sites
5' ss Seq
TACGTGAGT
5' ss Score
7.77
3' ss Seq
CACCCCCTGGGCTGCGGCAGGGT
3' ss Score
2.87
Exon sequences
Seq C1 exon
CTTCACCACGACCACTAAGGAGTCCCACCTGCGCCCCTTCAGCCTGCTCCCAGCTGAGTCCTGCCACAGGCCCTGGGAGGACCCCCACACCTGTGCCCAGCCTAC
Seq A exon
GTGAGTGCTTCAATCTTCTGGGAGCTGGTTAAGCCCCAGCCTCTTAGAACCTTTGGTGCTCAGAGGACATTCTGACCTCAAGGCATTCACCTGTCTACAGTGGGTACCCACGTGGCCTGTGGAGGTGTGTCTAGTTCATTGGACACGTGTGTGGCTGATGTGGGGGGTGGGGGGATACTTAACCTCTGACCTCCTCTTGTGCCTCACTGAGGTGTGAGGGGTGTACAGGGCAGCCAGGGCCTCAGCCGAGAGCACTGATGGCCACCCCCTGGGCTGCGGCAG
Seq C2 exon
GGTTGTCTACCGGACTGTGTACCGTCAGGTGGTGAAGATGGACTCCCGCCCACGCCTGCAGTGCTGTAGGGGTTACTACGAGAGCAGAGGGGCCTGTGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073-Pear1:NM_152799:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=FE(47.3=100)
A:
NA
C2:
PF075468=EMI=PD(39.2=82.9)
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACCACGACCACTAAGGAGT
R:
GACACAGGCCCCTCTGCTC
Band lengths:
204-486
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: