RnoINT0109566 @ rn6
Intron Retention
Gene
ENSRNOG00000014243 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:RGD Symbol;Acc:1305653]
Coordinates
chr2:187124307-187124799:-
Coord C1 exon
chr2:187124695-187124799
Coord A exon
chr2:187124408-187124694
Coord C2 exon
chr2:187124307-187124407
Length
287 bp
Sequences
Splice sites
5' ss Seq
TACGTGAGT
5' ss Score
7.77
3' ss Seq
CACCTCCTGGGTTGTCACAGGGT
3' ss Score
6
Exon sequences
Seq C1 exon
CTTCACCACGACCACTAAGGAGTCCCACCTTCGCCCCTTCAGCCTGCCCCCAGCCGAGTCCTGCGACAGGCCCTGGGAAGACCCCCACACCTGCGCTCAGCCTAC
Seq A exon
GTGAGTGCTTTTTCCTTCTGTGGGTCAGGAGCTGGTGAAGTCCCAGTCTCTCTTAGAACCTTTGGCGCTCAGAGGACATTCTGTGGTGTTCACCTGTCCACAGTGGGTGCCCATGTGGCCTGTTAAGGTGTGTCTGGTTCACTGTACACGTGTGTGGCTGGTGTGGGGCAGGGAGGGGATACTGAACCTCTGACTTCCTCTTGTGCCTCACTGAGGTGTGAGAGGGTGTCCAGGGCAGCCAGGGCCTTAGCTCAGAGCACTGACGACCACCTCCTGGGTTGTCACAG
Seq C2 exon
GGTTGTCTACCGGACTGTGTACCGTCAGGTGGTGAAGATGGACTCCCGCCCACGCCTGCAGTGCTGTGGGGGTTACTACGAGAGCAGTGGAGCCTGTGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014243:ENSRNOT00000019502:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=FE(47.3=100)
A:
NA
C2:
PF075468=EMI=PD(39.2=82.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACCACGACCACTAAGGAGT
R:
GACACAGGCTCCACTGCTCTC
Band lengths:
204-491
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]