GgaINT1021191 @ galGal4
Intron Retention
Gene
ENSGALG00000028622 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr25:409125-409559:-
Coord C1 exon
chr25:409313-409559
Coord A exon
chr25:409240-409312
Coord C2 exon
chr25:409125-409239
Length
73 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
ACTGCTCGCTTTCCCCGCAGCTG
3' ss Score
11.96
Exon sequences
Seq C1 exon
CGTGTGATGAGCGTTTGTGGGGCAAGAACTGCGAGCACCACTGTGACTGCCACCACGGGGCCCCCTGCAATCCCCTGAGTGGGGTCTGTGCCTGCCCCCCTGGCTTCACCCCCCCACTGTGCCACCAGCCCTGCCCGCCCGGCTCCTACGGCCCCGACTGCCGCCTGCACTGCCCATGCCACCACGGGGCCCCCTGCAACGCCTCCACTGGTGCCTGCCTCTGCCCCCCAGGACTTGCTGGCCCACT
Seq A exon
GTAAGTGAGGGTCCCTCTACGGGTGCCCGAAGGAGAGGGGGTCCTGTCTGCTCACTGCTCGCTTTCCCCGCAG
Seq C2 exon
CTGTGAGGTGCTGTGCCCCGAGGGGACACCGTGCGGCACCCACTGCCCCTGCCAGAATGGGGGTATCTGCCACCCCCCCGGCTCCAGCACCTGCGTCTGCCCCCATGGATGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028622:ENSGALT00000045144:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(70.7=34.9)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(26.8=28.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTACGGCCCCGACTG
R:
AGATACCCCCATTCTGGCAGG
Band lengths:
173-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]