MmuINT0117744 @ mm10
Intron Retention
Gene
ENSMUSG00000028073 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87757144-87758170:-
Coord C1 exon
chr3:87757927-87758170
Coord A exon
chr3:87757265-87757926
Coord C2 exon
chr3:87757144-87757264
Length
662 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CCTCACCCCCTATTCCACAGCTG
3' ss Score
7.86
Exon sequences
Seq C1 exon
AGTGTGCCCCGGGAATGTGGGGACCACAGTGTGACAAGTTCTGCCACTGTGGCAACAACAGTTCCTGTGATCCCAAGAGTGGGACGTGCTTTTGCCCCTCTGGCCTGCAGCCCCCCAACTGCCTTCAGCCCTGCCCTGCCGGCCACTATGGTCCTGCCTGCCAGTTTGATTGCCAGTGCTATGGGGCATCCTGTGACCCCCAGGATGGAGCCTGTTTCTGCCCTCCAGGGAGAGCAGGACCCAG
Seq A exon
GTGTGTTATGAGGCCATAAACATATGACCATAAATGAGGACATGATGGCGTGGAGAGACTGAGATCTTAGTTCAGCTCTGCTGGGTACCAGCCAAGCAGCTTTGAGCAGCCACCAATTCCTTTTGAAGGATTCCCTAGGCCAGCTGCCACTGTCATAGCATTAGAAAGTAAGCACATGTGTGCACGCGCATGTGTGTGTGCACGTGTGCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGAGTGTCATTAAGTGAGACTGAGATGTAGACCTAGGCAGAATCCAGGGCCACGTGCAGAGGGGCCTGGGGTGTTGAGTTCTCCAGGATGCAAGAGCTGACTAGGAGAAGGTTATCAAGAGGGGACCACCTGAGCAGGGGAGGAGATGCACAGGGCCCTGCATGCTGGAGGAACAGACCTGCAACACACTCTTGCTCTCCCCACCTGCTGATGCTGGGGTGTCCTTGCCAGCTACTTGCCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGAGAGAGCCCCTTCTGTGCAGAGGGCAGCCTTGGGGAGCAAAGAGGGCCCCTGAAGTTTCTTCCTCATGACCCTCTGACCTCACCCCCTATTCCACAG
Seq C2 exon
CTGTAATGTGCCCTGTTCACAGGGCACTGATGGCTTCTTCTGCCCCAGAACCTATCCTTGCCAAAATGGAGGTGTTCCTCAGGGCTCCCAAGGCTCCTGCAGCTGCCCACCGGGCTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073:ENSMUST00000172621:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCCCCGGGAATGTG
R:
CTGCAGGAGCCTTGGGAGC
Band lengths:
345-1007
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types