GgaINT1021662 @ galGal4
Intron Retention
Gene
ENSGALG00000026392 | PIPOX
Description
pipecolic acid oxidase [Source:HGNC Symbol;Acc:HGNC:17804]
Coordinates
chr19:5926322-5927144:+
Coord C1 exon
chr19:5926322-5926470
Coord A exon
chr19:5926471-5926942
Coord C2 exon
chr19:5926943-5927144
Length
472 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
GATGTGGCCGCTGGGTGCAGGCG
3' ss Score
3.49
Exon sequences
Seq C1 exon
TTCTTCCTGCCCCACTCGCGGGGCAGCTCACACGGGCAGAGCCGCATCACGCGCAGCGCGTACCCGCAGGAGCACTACGCTCACATGATGCCCCACAGCTTCCGCCTCTGGCAGCAGCTGGAGGACGAGGCGGGCACTCCGCTCTACAG
Seq A exon
GTGATGGGGACGGGGACCCCACGCTGGGCACAATCCCCTCCCCGGGAATGGGGCTGGGGCTGTGGGCAGGCAGCTGCGGGCTGCAGGTTATTTACGAGGCTCTGTAAGGGAAGAACCATTAAGGAAATAAGCGTGCAGCTTATTCCTTAATGGTTCCTTATCCTGCAGTGGGGTCGGGGCTAACGTACCGTCCATCATCCCCAGTGTCATCCAGGCACCGAGCCTCCGCTTCCCCAACCAAGGGGGTGGCACGAAAGGGCACATGGGAAATGGGATAGGGGATGTGGGATATGGGATAGGGGATAGGGGATATGGGATGGGGTAGAGGATAGGGGACAAGGAACATGGGATTGAGGATATGGGTTGAGGGATGAGACACGGGACAGGGGACATGGGATAGGAGACATGGGACAGGGGCCATGGCACGTGGCACAAGGGACATGGGTGCCGCTGATGTGGCCGCTGGGTGCAG
Seq C2 exon
GCGCACAGGGCTGGTGGTGCTGGGCCCGCCGGGTGACCCCAAGCTGGAGAGCTACCGGCGCAACATGGGACCCGACAACGTCCTCGATGCGGTGACGCTGGCACAGCGCTTCCCTGGGCTCCGTCCCCGTCCCACTGAGGTGGCCCTGTGGGACGGCAGTGGAGGCGTGCTGCTGGCAGACCGAGCGCTGCGGGCGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026392:ENSGALT00000045943:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=NA C2=0.088
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(13.9=100)
A:
NA
C2:
PF0126619=DAO=FE(19.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTCCTGCCCCACTCGC
R:
AGCAGCACGCCTCCACTG
Band lengths:
323-795
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]