HsaINT0125425 @ hg19
Intron Retention
Gene
ENSG00000179761 | PIPOX
Description
pipecolic acid oxidase [Source:HGNC Symbol;Acc:17804]
Coordinates
chr17:27371877-27380151:+
Coord C1 exon
chr17:27371877-27372025
Coord A exon
chr17:27372026-27379937
Coord C2 exon
chr17:27379938-27380151
Length
7912 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GGTGACTTATTTTTTAACAGGCA
3' ss Score
7.01
Exon sequences
Seq C1 exon
TTCTTTCTACCACACTCCCGAGGAAGCTCCCATGGACAAAGCCGGATAATCCGAAAGGCGTACCTGGAAGACTTTTACACCCGGATGATGCATGAGTGCTATCAGATATGGGCCCAGCTGGAGCACGAGGCTGGAACCCAATTGCACAG
Seq A exon
GTGGGCTGTGGGAGGAATTCCTTGAATCGTGGGGCTCTGCACCTGCAGGTACTTTTAGTGTGTGAAGTGGCAGCGCCATGGAACATTTGGAATGCAATGGGAGGGACACAAGGCCTCAAGAAGTACCAGATGCATGGAAGAGTTCTGCTGTCATGGTGGTCACCCCACAGGTCCAGCTGACTCTGGCCAGGCTCTGCGTTGCAGGACTGGGTTCAGACCATGTGTCCAAGGCTAGCAGAAGCAGTACTGGAAAGCCTGCTGGCAAGGCACCGTGTGGCAGATGCCCAGAGTGGACAGGAGTCTGCTGGAGTGTGTATTTTCAACTCTGTGGAGGCCTCTGCAACTCTTTTAGGGCAGGGGTTGAGATAGAGGAGGAGGCTGCTTTCAGGAGGATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACAGAGTCTCGCTTTTTTGTCAGGCTGGAGTGTAGTGGCGCCATCTTGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGTGATTCTTCTGCTTCAGCCTCCCGGGCAGCTGGGACTACAGGTGCGCACCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGATGGTCTTGATCTCTCGACCTCATGATCTGCCCTTCTCGGCCCCCCTAAGTACTGGGATTACAGGTGTGAGCCACCGTGCCTGGCCCAGGATTCTTTATAGTCAAATCAACATCCTAACTTTTCCTGAGGGGTCCTCACCCCCTTTAGCAGCCCTATAAACCCATTTTGTTCTCTCTGAGTACCTTTTCCTGTAGGAACAAAATGGGGACGTTCCCCAGGCTGGATTGCTTGCCAGGGAGTGAGCCTCCACGTCTTTCTCTGCTGCCTTCATGGCTCTCTCCAACCCTTGACCTTTCAAACACTCATGGGAAAGAAAGCCAATAATCTGTGATGCAATGGGAACTTTAACCATCCCACCTCCCTCCCACCTCCTCTGTGACTCTTAACTGAACTTCCTACAAACCCTGGCTCTACCTGATAGGGTGGTGGTTATTTTAATGGCCAGGAACCAAGAGGTTAGTGTTCTGTTGCAAAAATACCATTAACTTAAGAACAAAGTGAAATCCATTATGCAAATCAGCCAGGGCAGCTAATTACAGATTTATTCAGAGGCAGCTAATGCACCCAGCACCCAAATAAAGGAGCATGTCTTGCTGGTGGGTGGCCCGGCAGAGGGACCCCTCTCTGTCAGTTGTCTGTGAATACTGCTGAGCATCTTTTGCTAAAAGAATCGCCCTGGGCCTCAGAGGGCACACTTCCTCCTAGCACACAATGAGGCAACTAAGAGACGTTAGAGTGTCTGGAATCTTTCCGAGGGAGACGATTCTGGAGTGAGACAGGCTTAGGTTTGACATTGTGCTCTATTCCACACCAGTTGTGTGATCTTGGAAAAGTTTCTTGACTTCTCTGTGCCTCACTTTTTACGATAGGGCTCTGAGAGGATTAAATGAGACTTTTGTGAAATACTTGGCCCAATGTCTAGCACCTTTCAATAAGGGGCAGTCCCTTATTGACCCATTCTGGGTCAGCTGCATTCTGTTCCATTGAGCAACAGTGGGAGGAAAGGCAGGAGGAGACAGATGGGTGCAACAACCACAGATACCAAGGGGAGTGGCAGCAGGAAAGAGGGAGAGGGATCCTTGGGTAGGAGACTCTCAGAAGCGCACAATCCTCCTCTTTGCCAGGAGGACAGGAATTTGGACGGGCTTTGGAACTGGACCTGGCTCTAAATCTCAGCTCTGACACGCTCAGCTGTGTGGTTTGGAACGAGCTGTTGAACCTCTGGTGAGACTCAGCTTTTTTCATCTGTGAAGTAGGGATACTAATACCTGTGTCATGGTGCTGGGGTGAGGATAAGTAGGTAATGGGCTTAGAACAGCACCTGGAAAACCATCTTCCTCCTCCTCCTCACCATATATGTAGTGTTTACAATAAGAAACTAGGCTGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAAGTCAGGAGTTAAAAACCAGCCTGGCCAACATGGTGAAACCCCGCCTCTACTAAAAATACAAAAAGTAGCCAGGCATGGTGGTGGACACCTGTAATCACAGCTATTAGGGAGGCTGATGAGGCAGAAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATCACGCCACTGCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAGAAAAAAAAAGAAAAGAAAAGAAAAGAAAAAACTAAGAGTTGCCTAAGTACCTGACACCTATAACTCATTCCATTCTCCTCACAATCTTATGAGAGGGTTGCTGCCGGGTAGTCAGGGTCTTATCCCATTAATGCAAATCACAGAATTACTATACTCTTAAGTCTAGAATAGAGGTTGGCCAGCTTTATCTATAAATGGCCACGTAGTAAGTATCTTAGCCTTTGCAGGCAACGTGGTCTCTGTTACAATTATTCAACTCTGCCATTGTAGTGTGAAAGCAAGATGTAAATAAATGAGCCTGGATGTATTCTAATACAACTTTATTTATAGACACTGAAATTTGAACTTCATATAATTTTCATGTGTCACTCAACATTATTCTTCTTTGGATTAAAAAAAATCAACAATTAAAAAATTTAAAAACCATCTTGGCTCATGGACCAGACCAAAACAAGCAGAAGGCCAGATTTGGTCCCTGAGTGGTAGCTTGCTGGCCCTGGGTGTGGAAGATACCTCAAACTGGTTAACTTGTCCATTTCTGTCTCCAAATAAGTTCATGCCTAAATCATCCCAGGTCAAAAGACTGCTACTATGCATTTAAAGACAGGGAAATATCACAGCCCTTCTTAAAAGACCATTCTGATGTCTCATAGCCCCAGTTACGAAAAATGAAAAGTAATGTGAATATGCTTTAAAAACCTCTAGAGTGCTAAGTATTCTTACTACTATTGTTATTATTCTATTATTATAAGTCCTTTCTTATGGCTAACCTAATGTACTCAGGCACACCAATTTATTTGGTTCTTTTACTTAGCAGGGACACAGAGCAGATACTTCCCATTCTCAGAATGGTATCTGAATACAGCTCTACTACCTTTGGGCTAAAAGCCATTCTAATTCCTTTAGCTTTTACTGATTCTTATTTTCTAAATGATTCATCATCTGTGTGGTTCTTACTTTTCCCCAGGTTTTTCTAGAAGAACCAGCACAATACCATAATACTACTGATAGATATGAGCATACTTAATGCTATTTGATGATGATTAAAAAAAAACCTTTAGGAGTTGGCAGTTCAGGTGGTTGTCCAGTGCTTTTCATTCTGTTTAGCTGCTTCCTGTGACAGCGGCATACTAAACATGGGTGGGTTTGGGACATTTGCATATATTCTGGGAACAGACAATGACACATGTGTCAGATCACAAGGTCTGAATCTTTTGTGATGTGTACAGCCAGGATGCTGATTCCAACAGCAAAACCCAGCTCCCTGGCCCATCTCTTTCCTGCCCCGCCTTCTCCCTTTGAGTCCTACTGTCTAGCTCCTGACCTGGGCTGCCCCTGCTTAGCTGACAGTATCAGACAAGATCACAGCCGTAGGCAGTACAGCTGCTGGCAGAACCTGGTGGCCCCCTCTGCAGCTGCTGTTTCTTGTGTCTGCGAAGTGTCTGGCTTGTCAGCCACATCCCCTCCCTGGAGCAGTCTTTGTTAACCAATTCCACCTCGGCCCACTGAACGGAAGATGAAATGCCTAGAGCTCCTCCAAAACCAACAAAGGCAGCAGCCATTACCAAGTCCCCATTCGAATCCCTTCCCCAAGGTGACTCAGAGCTGGCTTGCTGGGCATTTTTAACCCACAGAGGGGAGAGCTGAAGCTTGGGATGGGAGATGGCAGGTGCAGGGAGAGCCGTCTCCTCTCCCAATTCCTCCCCACTCCATCCTACACCCTGTCCTGCTACAGTAACTGGTGGAAATCCCTGATCACCAACTCCCTACATCATATCTGAGGCATTAGTCGGGCTATAGCAGAGTCAACAAGGCCCTCGGGAGGAATCTTCAATTACCTCTTCCTAGTGCTGGATCAAGCTAGGGTCAGGAGGAAGGAATAGTTCATACTAAATGCTCTTGACTCAGCTGATGGGCATTCTGGGAGGTGGGAGCTGCACTCTTTTCTAGGGTTCCCTGGCAACCCATGTGCTGGCTTTCAGTCCTTCTTTGTAGCTAGTCCTGACCATTCATTTCCCGGTCATTTTTTATCCTGCTGATGCCCTTGTCTCCTCTCACCCTTCTCCTTCCCAAACTTACAGCCCAGGTCTAAGCAGAAAAAAAGAAGACAGGGAGGCCACGAACACAGGGGTGAGAAATTGATGCAGAATGAGCAGTCTATTTGTTGGTATCTAGAAAAAGCCATTAAGAAAATAAGCACTTAAATGATTTTCAATCTGCCCATGGAAGCCATCCATCTTCATACTGGGAGGAAAAGGCCCATTCTCCAATCCCGGTTTTGACTGACTGGTTTCCAATTCTCTAAGCATTTCCCATAGGAGCCTCTCACCTATCTCCCATAATCACAGGCCTTTGCATTTCCAGGCAGTGTTTTACATTTATTTCCGATTTGCTCATAATGGTCAAAAATCTCTCTCCAATCCAAGGCATTTCTCCAGCAGCGCACGGTTTCCCTCAGGCCAAATAGCTCAGCTGTGATCCACGGAAAATGAGAATTTCCCAAACACATCTTCGGACTAGGGGAGGGTCTGGCATCACACATTCAGATGGAAAATTTCCCACTGTTATATCAATATCTGGGCTAAGAAAGAAATGCCACAGGGGCAGAGAGCTGGAGCAAAATGATTACAATCGGCACAATTACATTCACCGGCAGAATCAGCTCGCTGATTACTCCCAGGGATGGGGAGCTCCCGCTTCATCCACCACAGGATGGCTTGGGAATTAGAACATCACTCAGCATTTCATAATTCAACAGATATGCCCGTTGTCTTGGCATGAGTTCATTTTTCCCACATAGTACATCCCTGTAAGAGGAGTCATTTCAAGGAAAGAAGGAAAGAAGGAGGAAAGAAAGGAGGAAGAAACAATGGAAAAAGGGAAAGGAAATCTCAGAGTATATGAGAGGCCAAAGCTGGTATATTGCAGGCAGAGATTAGAATATGCTGCTCTGGAATTTCCAGGTCAGGGATTTCACATTACATCTGCTTAGGTGTGGTTTAAGCCAGGTCTGTCCCAGAATCCCTCCCAGCCAGGACCCCATTGGGTAAAAAGGACTCAAGGAAATACACCTGAGTGACTTCATACTTATTTGTTGAGTAAGAAGTTTACTAGGGCCGGGCACAGTGGCTCATCTTATAATCCTAGCACTTTGGGAGATCAAGACAGAAGGATCGCTTGAGGCCGGGAGTTTGAGATAGGCCTGGGCAACATACTGTGTGACTCTTGTGTCTACAAAACACAAAAAATTCGCCAAGTGTGGTGGCTCACGCCTGTAGTCTGTAGTCCCAAATATTTGGGAGGCCAAGGCAGGAGGATTGCTTGAGGCCAGGAGTTTGAGATAGGCCTCTGCAACACAGCGAGACCCCTATTTCTATACACACAAAAAATTAGCCAAGTGTGGTGGCATGTGCCTGTAGCCCTAGAAACTTGGAGGGCTGAGGCAGGAGGAGCTCGCTTGCGGCTGCAGTGAGCTGTGAACGTGCCACTGCACCCCAGCCTGGGTGATAGAGTGAGACCCCATCTCCATTAAAAAAAAAAAAGAAAAAGAAAAAAAAGTTTGGCCAGGTGCAGTGGCCCCTGCCTGTAATCTCAGCACTTTGTGAGGCTGAGGTGGGCAGATCATGAGGTCAGGAGTTCGAAACCAGCCTGGCCAACAAGGCTCAATACAAAAATGAGCCGGGTGTGGTGGTGAGCGCCTGTAATCTCAGCTACTCCAGAGGCTGAGGCAGGAGAATTGCTTACACCCGGGGGCAGAGGTTGCAGTGACCTGAGATCGCACCACTGCACTCCAGCCTGGATGACAGAGCAAGACTCTGTCTTGGGAAAAAAAAAAAGTTTACTAGGTAAGTTTTCATTACCTCTGAACCAATCTGAAGTCCTTTTGGGGGCCACAGAAAAAAGACAGTCAGCTGAGAGCAGGGATTTCCACTGCATCTTTCCTCTGTTGAGCTTCGAAGAGGCAGAGCTCTCGTTGCTATCTCGCTGGTGGTGAATGCTGGGTAGGCGGGGGCCATGGCAAATGGATTGGGCACGCTGCGCGGCTCTGTGTACTGACACCCGCCCCAGGGCCCACGGTGTCCCTACCCCCTCCCAATCTTCTCTTTAATCCCCCCAACCAGATAATGTGGGATTTGGAAGCATGTAATATCCATGAGACTCCATTATAGGCTATTACGAGCTTTACACCCACTACCTGGGGGATGTACCAGGCCGCTGCTGGGCAGTGCAGCAGCTGCAATGGAGAAGGACCACGGGAACAGTCCCAAAGGCCAGAGTGACTCTTCCATTGTTTCTATCCGTTTCCCCCCAAAAGGGAGCTCTGGTCTCTTGTGACAGAGAGGCAGGAAGCATGAAAGAGAAACAGCTTTCACTCCCTTAGGGAGTAAAAGCATAGAGGGAGGTACAGGGAGAAACAAAATCACAGTCACTGAGTGTATTGGTGGAGCCCTAGGAGACCATCTATCGGTGTTTCTGCATGAGAACACCACTGGAATTTGGGGTGGAATCTTCTCGAGCATTGCAGGTGTAGCATCCCGGGCCCCTGCCCACTAAATGTGAGAGGCAGCACCAGGCATTGTGCCAACTACAAAAATGGATCATGCCATTTTCAGTTGTCCCTGGGTGGGCGGGTGAGTGGGCGGTACCACCCTGGTGTGGAACCATCAGTTGTTCAACAGGCACGTTACAGAGGAGGAATCTGGGCCCAGAGAGGTGAGTGACCTAATCAAGGTCATGGGCAAGGTGAAGCCAGGACTAGAGACAGAGCCAGATCTCTCAGTTTAGGACCCTTTCCACAAAACAGGCAGCCTCTGAGGAATGAGAGACAGAGACAGACACACAGGAAGGGACAAACATATATGACAAGAAAGAAAAAGAGGGAAGCGGGGAGGGCAGGGGAGAATACAGAACAGAGAGATCAAAATAGTGAATGGGATCAGGGGACAGGAGGAAGGGAAGAAATTTCATCAAACTGACTGAACTTCCACCACTTCCAAGCCATGGGACATGAAAGAGGACTTAGGATCTCTGCCCTCAAGGGCAGGATGGGTCCTGAGAAGGGGCATAGAGGACAAGAAAACCAATAGTGAGAGCCCAAGGGCAGACTTGGGAATGGGCTGGAAATCAGCATGAGAATACTGGGATTCTACCGACTGAATCTAGATGGCTTCACCTCTTCTCTGAACATGAGGCCATGACTCCTCTCAGGGCCTACACCTGGACCCGAGATCCCTCCTGAAGGAGAGCAAATGGCCCAGGGCTTTGCTTTGTTTTGCTTTGAGACAGGGGCTTGCTCTCTCATCCAGGCTGGAGTGCAGTGGTGCAATCATGGCTCACTGCAACCCTGACCTCCCTGGCTAAAGTGATCCTCTCACCTCAGCCTCCCAAATAGCTGGGATCACAGGCATGTGACACCATGCTTGGCTACTTTTTAAAAATTTTTTACTTTTTGCAGAGACAGGGTCTCATGATATTGCCCAGGCTGCTAGTGAACAAATTAGTGGCCTCAAGTCATCCTCCTGCCTCAGCCTCCTGAAGTGCTGGGATTACAGGCGTGAGTCGTCACATCAGGCCCAGGATTTTGAAACACACCTTCACCTAGGTGACTTATTTTTTAACAG
Seq C2 exon
GCAGACTGGATTACTGCTGCTGGGAATGAAAGAGAATCAAGAATTAAAGACAATCCAGGCCAATCTGTCGAGGCAGAGGGTAGAACACCAGTGTCTTTCATCTGAGGAACTGAAGCAACGTTTCCCAAATATTCGGTTGCCCAGGGGAGAAGTGGGGCTCTTGGACAATTCCGGAGGAGTTATCTATGCATATAAGGCCCTCAGAGCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179761-PIPOX:NM_016518:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
PF0126619=DAO=PU(10.6=95.5)
A:
NA
C2:
PF0126619=DAO=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)