GgaINT1021752 @ galGal4
Intron Retention
Gene
ENSGALG00000006237 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr8:14125672-14126032:-
Coord C1 exon
chr8:14125889-14126032
Coord A exon
chr8:14125748-14125888
Coord C2 exon
chr8:14125672-14125747
Length
141 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ATACGTTCCTTGAACTGCAGGTC
3' ss Score
7.03
Exon sequences
Seq C1 exon
TCACGTGAATTGGAAATCTCAGTTTATTGGCGTGACTGGAGATCCCTGTGTGCAGTGAAGTTTCTGAGGCTGGAAGATTTCCTGGACAACCAACGGCATGGCATGTGTCTGTATCTTGAGCCCCAGGGCACTCTGTTTGCAGAG
Seq A exon
GTGAGTGTTGTTCCTTCAAATGCTTGGGCATAGTTGCAAGTATTATCTTGCAGAGTAGATTAACAGATTTTTTTTCTTTAACTTTTAAGGATGCATTTTGTTCTGAAACTTGAATGATAACATACGTTCCTTGAACTGCAG
Seq C2 exon
GTCACGTTTTTTAATCCAGTTATTGAAAGAAGACCAAAACTTCAGAGACAGAAGAAAATTTTTTCCAAACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006237:ENSGALT00000010087:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGTGAATTGGAAATCTCAGT
R:
TTTTCTTCTGTCTCTGAAGTTTTGGT
Band lengths:
202-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]