RnoINT0112278 @ rn6
Intron Retention
Gene
ENSRNOG00000011317 | Pkn2
Description
protein kinase N2 [Source:RGD Symbol;Acc:620146]
Coordinates
chr2:248759920-248760421:-
Coord C1 exon
chr2:248760278-248760421
Coord A exon
chr2:248759996-248760277
Coord C2 exon
chr2:248759920-248759995
Length
282 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATA
5' ss Score
7.96
3' ss Seq
GTGTATTTCCTTTATTGCAGGTT
3' ss Score
10.32
Exon sequences
Seq C1 exon
TCACGTGAACTGGAAATTTCAGTTTATTGGCGTGATTGGAGATCTCTGTGTGCTGTAAAATTTCTGAGGTTAGAAGATTTTTTAGACAACCAGCGGCATGGCATGTGTCTCTATTTGGAACCACAGGGTACTTTGTTTGCAGAG
Seq A exon
GTAATACATGTATTTTATGTAATGTGCATCACTACAGTAGAAATTGTGTGTGTTGGCAGCATGATGTAGATGTGGCAAGAGTGTCAGGCTGAGCGACAGATATGTCCCTTGACTGCTCTGCTACATAAGGGCCTTGAGGAAACTCCTCTTTAGGTCTGTGCTCTCATCTGGTCAGTGGAGGGGTTGGGCTGATTGTAGCTAAAATGCCTTTACGTTCTCCAGCTTAGGGATCTAATAGATTATGTGAGCCATAGTCAATACAGTGTATTTCCTTTATTGCAG
Seq C2 exon
GTTACTTTTTTTAATCCAGTTATTGAAAGACGACCAAAACTCCAAAGACAAAAGAAAATTTTTTCAAAACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011317:ENSRNOT00000031748:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGTGAACTGGAAATTTCAGT
R:
TTTGTCTTTGGAGTTTTGGTCGT
Band lengths:
196-478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]