GgaINT1021994 @ galGal4
Intron Retention
Gene
ENSGALG00000000201 | PLEKHM1
Description
pleckstrin homology domain-containing family M member 1 [Source:RefSeq peptide;Acc:NP_001026095]
Coordinates
chr27:1586682-1588028:-
Coord C1 exon
chr27:1587871-1588028
Coord A exon
chr27:1587598-1587870
Coord C2 exon
chr27:1586682-1587597
Length
273 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GTCCTTTGTTCTTTTCCCAGGTG
3' ss Score
10.62
Exon sequences
Seq C1 exon
ATCTCCGACGGCGCCTTCGAGCCCTTCCTGCTCTCCCTGACCCACTTCGCGTCCCACCACGTCTACAGCTGCGATCTGTGCACGCAGCGCGGCTTCATCTGCCAGATCTGCGGCGGCAGCGACATCATCTTCCCCTTCCAGCTGGACTCCACGGCCAG
Seq A exon
GTGGGCTTCGCCCGCGGCGCTGAGCCCGGCGTGCAGAGCGGCCGCTGTGCGCCGCAGGGAGAGGAGCTCCGCCGGCAGCGCCGCTCCGTTCCTTTGCTCAGCCTTTGGCTCTGCGGCTCTCGTTGGCGGCCGTCGGCGTCCTGGCGGCGTTGGGCTTCGGGGCAGCTCGGGGTTGGGGGGCTGCGGCTGCACCCCTGGCTCCGGCAATGGGGCCGAGGGGCACCCCGAGCTGCAGGCGCCCAAACCACGGCGCGTCCTTTGTTCTTTTCCCAG
Seq C2 exon
GTGCAAAGACTGCAAAACTGTTTTCCACCGGGAGTGCTACGGCAGCACCGCGTCCTGTCCGCGCTGCGAGCGCCGGCGGCGGTACCGGCAGGAGCGCGAGGAGGAGGAGGAGGAGGAGGACGGGGAGGAAGGCAGCGCGGGGCCGATCCCATAGAGCCTGCAGCCATCCCAAAGGCGGCGGCGGATGAGGTCCCCACCAGCCCCAAAAGCAGCGGGAGGCGGTGCACAACGAGGTGTCAGCCCAGCAGCCGTGGGGTCACCCGGAGAGCCCACGGCCAACGGGGGGCGGATGAGCAGAGGGGGCTGTGGGGCTGCAGCCGTCCCCTACCAACACCCCACCGATGGGACGCAGTGACACTGTGACGGGTTTGGGTGTCCCTGGGGGATGTGGGGATGTGGGGATACGTAGGTGGGGGCTCCCCGGGGCCTGCAGTCCCCATCCCTTTGGGGTTTCTGTGTCCCCATCCCTTTTGGGTTTCTCCATCCCCATCCCTTTGGGGTTTCTCCGTCCCCATCCCTTTGGGGTTTTGGTCTCTCCATCCCCAGGGGGACACGGGGACGGGGGCTCCCCACACTTTGGGGTCAGACGTGCCAAGGGAACACGGGGCTGTGCAATGCCACCCACCGGGGTCGGTGCCGTCCCCCACTACCAGCGCCCCAACGTCCCCCAGATGGCACCGGGGGCTCACGTGCTGTGCAGTGGGGTGGGCTATGGGGGCAGCTGCCGTCAGTGGGGCCCGGAGCCGAGGGCTGTGTGAGCTGTGCTGGGTGAGCTCGGGGCTTTTTTGGGTGTGGGGTTTTGCAGGGAGCGCCGGGTGGCAGCGCGGGGCGTTGTGCCTTATGGGGCAGAGCTGCTCTGCCACCCTTTTAACCCCCGGCCCTTCTGGGGCCGCAAAGAGAGTTTTATTTTCCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000201:ENSGALT00000000267:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.412
Domain overlap (PFAM):
C1:
PF139011=DUF4206=FE(25.5=100),PF144461=Prok-RING_1=PU(45.6=49.1)
A:
NA
C2:
PF139011=DUF4206=PD(14.2=55.8),PF144461=Prok-RING_1=PD(52.6=57.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCATCTGCCAGATCTGCGG
R:
CTGACACCTCGTTGTGCACC
Band lengths:
306-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]