GgaINT1023083 @ galGal4
Intron Retention
Gene
ENSGALG00000006853 | QARS
Description
glutaminyl-tRNA synthetase [Source:RefSeq peptide;Acc:NP_001012800]
Coordinates
chr12:11584227-11584568:+
Coord C1 exon
chr12:11584227-11584357
Coord A exon
chr12:11584358-11584475
Coord C2 exon
chr12:11584476-11584568
Length
118 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGG
5' ss Score
5.61
3' ss Seq
AAAATTCACACGCCCTGTAGGTG
3' ss Score
5.77
Exon sequences
Seq C1 exon
GACATGCGAAAGGGGAAGTTTGGGGAGGGGGAGGCCACGCTGCGGATGAAGCTGGTGATGGAGGATGGGAAGATGGACCCCGTTGCCTACCGCGTCAAGTTCACACCACACCACCGCACCGGGGACAAGTG
Seq A exon
GTATGGAGAGCCCACAGCGTCCCACAAGATGTGTCAGGGACGGGTCTGTGGGTATGTGGAGCGGGAGGGTCTTGGGAGAGGGACGGGGAGGCTGGGGCAAAATTCACACGCCCTGTAG
Seq C2 exon
GTGCATCTACCCGACGTATGACTACACTCACTGCCTTTGCGACTCCATTGAGCACATCACGCACTCCCTCTGCACCAAGGAGTTCCAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006853:ENSGALT00000011085:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0074916=tRNA-synt_1c=FE(14.3=100)
A:
NA
C2:
PF0074916=tRNA-synt_1c=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAAGGGGAAGTTTGGGGAG
R:
CTGGCCTGGAACTCCTTGGT
Band lengths:
218-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]