Special

HsaINT0135702 @ hg38

Intron Retention

Gene
Description
glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:9751]
Coordinates
chr3:49099761-49100091:-
Coord C1 exon
chr3:49099961-49100091
Coord A exon
chr3:49099854-49099960
Coord C2 exon
chr3:49099761-49099853
Length
107 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
CCACTGCCTATGCCCCACAGGTG
3' ss Score
8.68
Exon sequences
Seq C1 exon
GCAATGCGCAAGGGCAAGTTTTCAGAGGGCGAGGCCACACTACGGATGAAGCTGGTGATGGAGGATGGCAAGATGGACCCTGTAGCCTATCGAGTCAAGTATACACCACACCACCGCACAGGGGACAAATG
Seq A exon
GTGGGTGTAGAATGGGGTGGGGTGGTGGGGCTGCCGAGCAGGGCGATGGGCCATGGGGTAGGGCAGAGTAGGGCTGGATGGTAGGGCCCACTGCCTATGCCCCACAG
Seq C2 exon
GTGCATCTATCCCACCTACGACTACACACACTGCCTCTGTGACTCCATCGAGCACATCACTCACTCACTCTGCACCAAGGAATTCCAGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172053:ENST00000306125:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0074916=tRNA-synt_1c=FE(14.3=100)
A:
NA
C2:
PF0074916=tRNA-synt_1c=FE(10.3=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCGCAAGGGCAAGTTTTC
R:
CCTGGAATTCCTTGGTGCAGA
Band lengths:
218-325
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development