Special

RnoINT0121184 @ rn6

Intron Retention

Gene
Description
glutaminyl-tRNA synthetase [Source:RGD Symbol;Acc:1359448]
Coordinates
chr8:117302766-117303071:+
Coord C1 exon
chr8:117302766-117302896
Coord A exon
chr8:117302897-117302989
Coord C2 exon
chr8:117302990-117303071
Length
93 bp
Sequences
Splice sites
5' ss Seq
ATGGTATTC
5' ss Score
2.04
3' ss Seq
CGGCTGCCTATGCTTCACAGGTG
3' ss Score
7.35
Exon sequences
Seq C1 exon
GCAATGCGAAAGGGCAAATTTGCAGAGGGTGAGGCCACGCTTCGAATGAAGTTGGTGATGGAAGATGGAAAGATGGACCCTGTGGCCTATCGAGTCAAGTATACGCCACACCATCGCACAGGGGATAAATG
Seq A exon
GTATTCGTTGGCATGGGAGGGGTGGTGAGGTAGCAGGGCTGTGGATTATGGCAGAGGGACTGGTTGGTGGACTCGGCTGCCTATGCTTCACAG
Seq C2 exon
GTGCATCTACCCCACCTACGACTACACACACTGTCTCTGTGATTCCATCGAGCACATCACCCACTCACTGTGTACCAAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060912:ENSRNOT00000082628:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0074916=tRNA-synt_1c=FE(14.3=100)
A:
NA
C2:
PF0074916=tRNA-synt_1c=FE(9.0=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTTGCAGAGGGTGAGGCC
R:
GAGTGGGTGATGTGCTCGATG
Band lengths:
182-275
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]