GgaINT1023106 @ galGal4
Intron Retention
Gene
ENSGALG00000003933 | QSOX1
Description
Sulfhydryl oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8JGM4]
Coordinates
chr8:5971304-5972378:-
Coord C1 exon
chr8:5972276-5972378
Coord A exon
chr8:5971395-5972275
Coord C2 exon
chr8:5971304-5971394
Length
881 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
ATGCTGTCATCCTCTTGCAGTGC
3' ss Score
9.05
Exon sequences
Seq C1 exon
ACCCTACTGCCACTGTCGCAGACCTGAGACGTGCCATCATCACCAACCTGGAGCAGAGCGGGGACGCCTGGCCACCTGCATGCCCTCCACTGGAGCCAGCGAG
Seq A exon
GTATGGGCACAGATAAAGGGGTTTCCCAGGGAAATACTGAGCCAGAAGCTCTCAGAAAGCTCGTTGTAGTTATTATTACTAATTTTCTTAATGATTTTCAATTCAACCTGGCTGAAAGAGAGCAGGCGGTGCGTGGCGAGGGAGTGTTTGGCTTTCCCAAAGCGATGGCTGGGCCAGGGTCACACTGCAGCTCTCTGTGTCCCAGGAAAGAAACAGGACACCAAACAGATTGGCTCAGATTCGTGGCTCTTGCGTTGTTTCTTTCTCCGTGGGTGAGCACGCAGCTCCATCCTGCCCTGCCTCCCCTTTGTTTTCTGCCTCCTCACCTGACCCTGTGGGCTTTCAGAGCCTGTGAACTGGAGCAGAAAACTGGGCTGGAAACCTCAGTGGGGAGGAACCAGGGCTGGAACCACACTGGTGGCATCACAGCCCCAATCCGTGTGGGTAAGGGATGGCCCTATTCACCTGGGGGGACAAAGCAGCCCACCACCACCATGCTCCTGTCTTTAGCCCGGAGAAGAGAAGGCCCTGGGGAGACCTCAGGGGGCATTTCAGTATGTAAAGGGGGACTGTTAGAAGGAAGGGGGCATTCTTTAGCAGAGCTTGCTGTGACAGGACGAGGGGAAATGGTTTCAAACAAAAAGAGGGGAGATTTAGACTGGGTATGTAAAGAAGGAGGTTTTTATGGTAAGGGCGGTGAGGCAGTGGCACAGGCTGCCCAGAGAGGTGGTGGTGCCCCATCCCTGCAGACAGCCAAGGCCAGGCTGGGTGGGCTGTGAGCACTGATGGAGCTGTGGGTGTCCCTGCTCAGTGCAGGGAGTGGGACCAGATGGCCTTGAAGGCTCCCCTCCAACTCAAATGATGCTGTCATCCTCTTGCAG
Seq C2 exon
TGCCGAGGAGGTTCGCAGCTTCTTCCACAGGAACACGGAGCGGTACCTGGCGCTGATCTTTGAGCAGAGCAATTCCTTCGTGGGCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003933:ENSGALT00000006266:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PD(16.4=28.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACTGCCACTGTCGCAGA
R:
TCTCTGCCCACGAAGGAATTG
Band lengths:
191-1072
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]