RnoINT0121276 @ rn6
Intron Retention
Gene
ENSRNOG00000003649 | Qsox1
Description
quiescin sulfhydryl oxidase 1 [Source:RGD Symbol;Acc:68957]
Coordinates
chr13:73441384-73443941:-
Coord C1 exon
chr13:73443839-73443941
Coord A exon
chr13:73441475-73443838
Coord C2 exon
chr13:73441384-73441474
Length
2364 bp
Sequences
Splice sites
5' ss Seq
CAAGTATTT
5' ss Score
1.24
3' ss Seq
ACCCCGTTTATCTCTTGCAGGCT
3' ss Score
11.01
Exon sequences
Seq C1 exon
CCGCTGGTGCTAATGTGCAGACGCTGCGTATGAGGCTCATCGATGCTCTGGAGTCCCACCGTGACACGTGGCCCCCAGCATGTCCACCCCTGGAGCCTGCCAA
Seq A exon
GTATTTTGGGTTGGGGCTGACTTAGTGTAGCATGAGGCTTAAGCATGGAGAAGATGTTGGGAACCACAGGGCAGAGGACCCACACTGATTCCTCCTGTGGGGTAGATAGATCCCCCAGTGTGCTAGACATACCTTAGAGTAGCTGGGAAGTGACATCTTTCTGCTTCAAGAGTTAAGGAGCCATGTCCCTTAGGAGCTGGCTGAGGGTTGAAGGGCCTGACCTGCTGTGTGGAAGGAAAAGTGTGTGAGGGGAGTTCTCCAGATCCTACTTGATGCTGCACTTCCTGACTGGTCTTCAGGCGTGTTTGTGGGAGTAGGGGTTTTCTCTGGCCTAGTCCAGGGAAAGCCACTGACAAATGACAGAACAGAGGAGATTGGATACAACTAGGAAGAAAAGGCTAGGATGTGCCGAAGAGTAAAGCCCTATTTGTAAACTGATTATGGTCAGCTGGTCAACTGATCAACTGGTCAACTGGTCAACTGGTGTTGGATCCGATTCACAATGACTCCTTTATCATCTTTCCCAATTCTTCATCTTCCTAGAGGGCCTCACAGAGACCCTGACCAAGCATACACTCCTAATGTAGGTCGGGGTTCTACAACCGACTGTCTGTGCTGGTTGTTGGTTTCTTTCTTTTCTTCACTGCTGTGACAAATACCTGATAATTTAGAGAAAGAAAGGTTTGTTTTGTCCCATTACATTAGAGGTTTCAACCCAAATTTGGTGGGACCAGTCAGTTGGGATCTGAGATTATACAGAGTATCAGGGCAGCCAGAGCATATGACAGAGGCTACTCACGTCATGGTAGCCCAAAAGGAGAGAGGGGGTTCAGGACAGTACAGCCCCCGGGGCATGTGCCCAGTTGTACACTGTTCCAACCAGGGCCCACCTGATTCGGCATTGACTAGGAATCCATAAGCCGGATAATCTACTGATTAAGTCAGGCCCCTCATTAACCAGCCATCTCTCAATGATTGGGTCCACCTGCAGGGACTAAAGCCTTCAACACATGAGCCTTTTGTGGGCACAGTTCCTATCCAAGCTATAAATATCATCCATCTAAGAAGTGAGCTTGTCAGCCTGTACCCTGGTGCTTTTCTCCTCCTTCCATTTCCTCGTGGCTATGTCTGTCTGCCTGTCTGTCTGTCTCTCCCTCTCCCCTCCCTCCCACTCTCCCTCTCTCGCCCCCACCCCCCTCTTTTCTCAACACAATACATACACACACACACACACACACACACACACACACACATTTTCCTTTATAGTGTGTTTTTAGCCCTGGGAACCTTAAAAGCAACAAACTGGCCAAATCTGTCGACCTGTCTCTAAGTGATCCTTTTGGTGCCCCTTAGGAAGAATATAGGCAGACACACGTGCTGAAACTTGAGCTGCCTCTTCCAGAAGGCTGAGGACTTGCTCCTCTGCCAGCCTAGGGTAGGTATGAGGATGTGGCCAGAGAGACTGGCCACCTAATGCCACCCAGAGGCTGATATTAGGTAGCTACAGAACCTCTTTTATCCATCAAAGTTCTTCCTGATCCCCACTTGTCTGTCAGATTCATATCTCTGTACTGCCAGCAAGCGGGTTCTGGCATTGACCTGGTGTCACCCTTTCTTTTTGAGGCATTTGCTACATACATGTCTTTGGGTTAAGTGTGGGGAAGTGAGACACCAGGTTGAGGATAAGAGTAAGATGCAGTCTTTCTGACCCATGTGCCTTCTCAGTTGCTCTCTTAAACATGCTGGGAGAGACAGTTTTCACTGAGTATTTAAAACAATCTGTAGGTTAGTTCTATGGTTGAGAGAGAGAATTTGCCTTCTTAATCATTTCTATCCAAGAAAACTGGGCCTCACTCTCCTCACCTTGAGCTAAAAGGTTTGATTCTCCTGCACCCAGGACTCTAGTTCATTTCTTCCTTTCTTGTTCCTGTTTGGAGAGGAACATGCAGCTCTCCCCACTGGTCATGGCTTACTGTGGATCAGAGCTTGCACTTGATGGGTTCTAATCACCAGTCTCTTAGGGAACCAGTAAAACCATCTTCAGTAAGCCTGGGCCTTACCCAGAACGTGGAGACAGCTGGTCTGAAAGCATCCCCACCACTTCTCTTCCCCAGCCTGCCTCCTGTTTACTCCTGACTCCTAAAAGGGACAGAAAGAAAACTATAAAACAATAAAACCCAAGGTGGGTCAAATAAAGCAGAGTGAGGTAGCACGAGTAGCATCCTCTGAGACTTAAGGGTTCACTTTCCTTCCACTGGTGGGCTGGCAGAGGGAGGCCACAGGACTGTGGGACATTCTGCATTGGATGTCTTACATCATCCCCGTGGGCTATGGAAAGAGCATGACCCCGTTTATCTCTTGCAG
Seq C2 exon
GCTGAAGGATATCAATGAATTCTTTACAAGAAGTAAAGCAGAGTACCTGGCCCTGATCTTTGAAAGGGAAGACTCCTATCTGGGTAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003649:ENSRNOT00000005052:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PD(5.8=17.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]