DreINT0123221 @ danRer10
Intron Retention
Gene
ENSDARG00000039459 | qsox1
Description
quiescin Q6 sulfhydryl oxidase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7019]
Coordinates
chr8:14506879-14507628:-
Coord C1 exon
chr8:14507526-14507628
Coord A exon
chr8:14506970-14507525
Coord C2 exon
chr8:14506879-14506969
Length
556 bp
Sequences
Splice sites
5' ss Seq
TAGGTTAGA
5' ss Score
2.99
3' ss Seq
AATTAATTTTCTCTCCCCAGTGA
3' ss Score
8.6
Exon sequences
Seq C1 exon
GATTTTCAAGGGATGTGAGAGGACTTCGCCAATACATTATTGAGAATTTGGAGCTACATACCGAGGCTTGGCCGCCGGCTTGTCCACCTTTAGAGACGGCTAG
Seq A exon
GTTAGAATGCCATGTCTTTCTTTCCTTTTATATTTGCACTGAGAAATGTAAGGAGCTAGACCCATGTCATCTTTCTGTTGATTTAACAGTGCTGTAGTGTAAATAGCATTGCTTGTTGCAGTCAGTAAGCGTGTCAGTTTTGTGTGCTTTTAGTCAACATTGCTGTGTTCAAAAGGTCGCTCAAACAAGGAAGGAAAAGGACACGCCAAAACTTTGATGTGTATCACTCTTATTTCTGCATTCAAAGGCGTCTGACAAAACATGGCAGGAAATAAAAGAGGCGATTAAAAAGCACAGAAATGTCTAAAGTACGTTGGACTGTAGTTTAAGTATTTGATTGGTTTCAAATTTTAGAATCATTAGACTAATAACTATTTTGTTACAGTTAAACTTAAACGGTTAAAGTTAAGTAGACATATTTTTAGTTCAAGACTCGCTCAGATGTATTTAGGATATGAATAAAGAAGCTTAATTATTGTTATTATACACTGGTTTAATTGATTTTGTTAACTTATTTTATTAACTTATTTGAATCTAATTAATTTTCTCTCCCCAG
Seq C2 exon
TGAGGCAGAGGTACACCACTTCTTTCCGGCCAACAATGTGAAGTATCTTGCTCTCGTGTTTGAGAATAAAAAGTCTTACGTGGGAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039459:ENSDART00000057645:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PD(12.4=40.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAGGGATGTGAGAGGACT
R:
CTCTCTTCCCACGTAAGACTTT
Band lengths:
190-746
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]