GgaINT0037239 @ galGal3
Intron Retention
Gene
ENSGALG00000003933 | QSOX1
Description
NA
Coordinates
chr8:6291969-6292136:-
Coord C1 exon
chr8:6292033-6292136
Coord A exon
chr8:6292028-6292032
Coord C2 exon
chr8:6291969-6292027
Length
5 bp
Sequences
Splice sites
5' ss Seq
AGGTATGGG
5' ss Score
-17.72
3' ss Seq
CTGGAGCCAGCGAGGTATGGGCA
3' ss Score
-22.14
Exon sequences
Seq C1 exon
ACCCTACTGCCACTGTCGCAGACCTGAGACGTGCCATCATCACCAACCTGGAGCAGAGCGGGGACGCCTGGCCACCTGCATGCCCTCCACTGGAGCCAGCGAGG
Seq A exon
TATGG
Seq C2 exon
GCACAGATAAAGGGGTTTCCCAGGGAAATACTGAGCCAGAAGCTCTCAGAAAGCTCGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003933:ENSGALT00000006266:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PD(16.4=28.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCACCAACCTGGAGCAGA
R:
TGGCTCAGTATTTCCCTGGGA
Band lengths:
106-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]