BtaINT0121061 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011129 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr11:103758466-103758796:-
Coord C1 exon
chr11:103758691-103758796
Coord A exon
chr11:103758557-103758690
Coord C2 exon
chr11:103758466-103758556
Length
134 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
AGGCTCTGTCTTCTTAAAAGGCC
3' ss Score
5.51
Exon sequences
Seq C1 exon
GGCCCGACCGAGAACTGCAGACAGTGAGGCGGACCATGATCAACTTCCTGCAGAACCACACAGACGGCAATCGGCCCCCCGCCTGCCCGTCCTTGGACCCCATCAG
Seq A exon
GTGTGTGCTTCTGTGGAAAAGGCAGCACGTTTCAAGTTGAATTTAATTTTGTAGAGTAGAGACGTGCATTGAGTGATGTGGGCACTGGTATGCGATGGCCTTGAAGACACTAAAAGGCTCTGTCTTCTTAAAAG
Seq C2 exon
GCCCAGTGACGTCCTTTCACTCATCGACAAGCGAGGTGACCGGTACGTGGCTGTGCTGTTGGAAGATGACAGCTCCTACGTCGGACGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011129:ENSBTAT00000042859:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PD(10.8=33.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACCGAGAACTGCAGACA
R:
CTCGCGTCCGACGTAGGAG
Band lengths:
194-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development