GgaINT0125836 @ galGal3
Intron Retention
Gene
ENSGALG00000001758 | QSOX2
Description
NA
Coordinates
chr17:8716030-8716416:+
Coord C1 exon
chr17:8716030-8716135
Coord A exon
chr17:8716136-8716325
Coord C2 exon
chr17:8716326-8716416
Length
190 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
GCTAAATCTTTTCTTAAAAGGTC
3' ss Score
6.04
Exon sequences
Seq C1 exon
GAGCCGATCGTGAGCTGCAAACAGTTCGCCAGATGATGATTGACTTCTTGCAGAACCATTCCCAAGAGTCAAAACCTCCAGCTTGCCCACCATTGGATCCAGTTTT
Seq A exon
GTAAGTTCCTTGTTGAAAATGCAGCTAATGTATGCCTGCTGTGTTAATTAAATATTATATAGATAGTCTTATTAAAGATGAAGTAAGCTTTTTATTGTTGTTATCAGTACTACTACAAGATAACAAAAGGGAGTTCTGTTGATAACAGTGAGCTTATTGCATTCTCCTGTGCTAAATCTTTTCTTAAAAG
Seq C2 exon
GTCCAGTGATGTTACTTCTCTCTTTGACGAGAAAGCCCCTCATTATACTGCCATTGTGGTTGAAAGTAATAACTCCTACATTGGACGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001758:ENSGALT00000034856:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PD(12.5=38.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGATCGTGAGCTGCAAACA
R:
CTCTCGTCCAATGTAGGAGTTAT
Band lengths:
194-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]