GgaINT0125836 @ galGal4
Intron Retention
Gene
ENSGALG00000001758 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr17:8025714-8026103:+
Coord C1 exon
chr17:8025714-8025822
Coord A exon
chr17:8025823-8026012
Coord C2 exon
chr17:8026013-8026103
Length
190 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
GCTAAATCTTTTCTTAAAAGGTC
3' ss Score
6.04
Exon sequences
Seq C1 exon
CAGGAGCCGATCGTGAGCTGCAAACAGTTCGCCAGATGATGATTGACTTCTTGCAGAACCATTCCCAAGAGTCAAAACCTCCAGCTTGCCCACCATTGGATCCAGTTTT
Seq A exon
GTAAGTTCCTTGTTGAAAATGCAGCTAATGTATGCCTGCTGTGTTAATTAAATATTATATAGATAGTCTTATTAAAGATGAAGTAAGCTTTTTATTGTTGTTATCAGTACTACTACAAGATAACAAAAGGGAGTTCTGTTGATAACAGTGAGCTTATTGCATTCTCCTGTGCTAAATCTTTTCTTAAAAG
Seq C2 exon
GTCCAGTGATGTTACTTCTCTCTTTGACGAGAAAGCCCCTCATTATACTGCCATTGTGGTTGAAAGTAATAACTCCTACATTGGACGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001758:ENSGALT00000034856:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PD(10.1=29.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGATCGTGAGCTGCAAACA
R:
CTCTCGTCCAATGTAGGAGTTAT
Band lengths:
194-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]