HsaINT0135821 @ hg38
Intron Retention
Gene
ENSG00000165661 | QSOX2
Description
quiescin sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr9:136223763-136224112:-
Coord C1 exon
chr9:136224007-136224112
Coord A exon
chr9:136223854-136224006
Coord C2 exon
chr9:136223763-136223853
Length
153 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
TCTTTTTTTCCTCTTGAAAGGCC
3' ss Score
8.25
Exon sequences
Seq C1 exon
GACCTGACCGAGAGCTGCGAACAGTCAGACAGACGATGATTGACTTCCTGCAGAACCACACGGAAGGAAGCCGGCCCCCTGCCTGCCCGCGCCTAGACCCCATTCA
Seq A exon
GTGAGTAGCTCCATGAAGAAGGCGGCCGTTAGACTCGTGTTGAACTGTGCAAGAAACGTAATAGGTTTCTATTAAGTGATGTGGCCACTGGGATGTGGTGGCCAACTCGCTGCTGTTGACGGCACTAAAAGCCTCTTTTTTTCCTCTTGAAAG
Seq C2 exon
GCCCAGTGATGTTCTTTCCCTTCTTGACAACCGTGGCAGCCATTACGTGGCTATTGTCTTTGAAAGCAACAGCTCCTACCTTGGACGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165661:ENST00000358701:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PD(10.8=33.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCGAGAGCTGCGAAC
R:
CTCCCGTCCAAGGTAGGAGC
Band lengths:
194-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development