HsaINT0135821 @ hg19
Intron Retention
Gene
ENSG00000165661 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:30249]
Coordinates
chr9:139115609-139115958:-
Coord C1 exon
chr9:139115853-139115958
Coord A exon
chr9:139115700-139115852
Coord C2 exon
chr9:139115609-139115699
Length
153 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
TCTTTTTTTCCTCTTGAAAGGCC
3' ss Score
8.25
Exon sequences
Seq C1 exon
GACCTGACCGAGAGCTGCGAACAGTCAGACAGACGATGATTGACTTCCTGCAGAACCACACGGAAGGAAGCCGGCCCCCTGCCTGCCCGCGCCTAGACCCCATTCA
Seq A exon
GTGAGTAGCTCCATGAAGAAGGCGGCCGTTAGACTCGTGTTGAACTGTGCAAGAAACGTAATAGGTTTCTATTAAGTGATGTGGCCACTGGGATGTGGTGGCCAACTCGCTGCTGTTGACGGCACTAAAAGCCTCTTTTTTTCCTCTTGAAAG
Seq C2 exon
GCCCAGTGATGTTCTTTCCCTTCTTGACAACCGTGGCAGCCATTACGTGGCTATTGTCTTTGAAAGCAACAGCTCCTACCTTGGACGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165661-QSOX2:NM_181701:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.301 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PD(10.8=33.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCGAGAGCTGCGAAC
R:
CTCCCGTCCAAGGTAGGAGC
Band lengths:
194-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)