DreINT0017535 @ danRer10
Intron Retention
Gene
ENSDARG00000077174 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr5:63610408-63613345:+
Coord C1 exon
chr5:63610408-63610513
Coord A exon
chr5:63610514-63613254
Coord C2 exon
chr5:63613255-63613345
Length
2741 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
3' ss Seq
GAGTTTGTGATCTGTTGCAGGTC
3' ss Score
8.6
Exon sequences
Seq C1 exon
GAGCTGACAGAGAGCTTCAGACAGTCAGGCAGTTGATGGTGAACTTCATCCAGAACCACACTAGACAAGACTGGCCTGTGGGCTGCCCTCCGCTTCACCCTGCCAG
Seq A exon
GTGCCCAAATCTGTTACATTAAAATCCATTTGTGTACATCTTGCGTAGACATATTCATTCCAGACATACTTAAAGGCTGTGTGTACTGGAAGTTGCTAATACTTTTATTTCAGTATGTTGATGTACTTCAGACTAAAACAGAATATTGAGTAGGGGGTGTGGCTTTCTTTTTGAGCATTATTCCCCTCTGGCAATTTAACAGTATGAATGGCATGGTTATGAATATTGTGACTGAATCTGATAAAAAAAACATCAACAGAAGCAGAAAGGTGCTCAGATTGTGATTTGAAGATTACCAAAACAATTTGTTTTCAGTGGATAGACTTTGCATTGATTAATCGTTCACATTAAGAATAACAATGTGAGCTAGAAAAATTGGAAACGTTGTACATTTTCTTTTTTTATAATATTTTTTTTCTGGGTTTTCACCATTATATGGAAAGGAAAGTAGAGAGAATTGACAGAAAAGCTTTGGGAGCCAAGTGAGGGTCGGCAAAGGACCGCGAGGCGGAATCAAACTCGGGTCGCCATGAGCACCAGAGTGCATGTGTCGACGCACTTACCACCACACCGCTGGCGCCGACACATTTAAATTTTTTACAGGCTCATTTTACAATCACACTAGAGGTAAAGATTTGACTTTTACCATTTTTCATGGTTCCCACAGTCCATGGAATTTCTAAAATGTCATGTAATTTTAAAAAGTCTATTCCAGACATTAGAAGTCAGAGAGTTTTACATATATTTTTGGTTCAGGTCATGAAATATCATCAACTGTCAATCAAATATATTAAAACAGAATGATTTTTTACAACATCATCAAGCAGCGTAAGTTGTTTTGTTTTGCTTAAAATAAATGGAAGTGAAAGAGACCAGAAGTCTTGACACATTTAAAGATTTATTTATTTTACCCCTTTTTCAAGATTAAGGCAAGTCATTTGTGTCTACAGAATGTGTCTGTAGAGTTCAGCTCAAAACACCAGCGGTTCCCATTTACTTTGAATTGGTGACGTCAGGTGTCGCCGAACTGCGTTGTGGATTCGTCGGCGCCGCTTCAGTGGCGTCGTTTACTGCAGAAGTTGGGACTTTCTCAACCAATCAGATCGCTGTATGCAAATTCACCAGCTCAGACCTGATTGCTGACTAATTTCATTGGCTTTTCAGACACACCCTCTGTCAAGCGTTAACACTGAAGCCCCATGTAAAAGCACCTTAAGAACTTTCCCAACTGTTGATGTATTTGTTGTGGATTTAATTCAAGCCTTTCTGCAATGATGAGTCACACACAATGTCATTACAAAGTTAGCGTGCTTGGGTGCGTACACACATTGAAAAAAACACACACACATTTTTGTCTTTATTATGAACATGTACTGTTTTAAAAAAGTTTAAAAACTTGTAAAACCTATTCTTGAGGTTAAGGATGATCACAGAGAGCCGCGATCTTTTAATCGCAGTTGATTTATGCACATCCTGTATTGCTGGTATGCATTTCTACAAAGACGTGTTAATACGTGTCTGTCAATCAATTCGGTAGGCGGGGAAACCACACTCCTACATCACGTTGTGGTGGGCCTCAGAACAGGAGGTAGTTGGATCCTGTTTTAACGAAAGGAAATTTATCAAAAAGAGTCTTATTGTGTTTCTATCACTCCAATATGACCATGCACACACTTTACCTACACACAGTTCTGTCTAAACATCTTACAAAAGTTGATTTTCATCATGGGTACCCTTTTAGTTACAATATTCGTGCCATACTCATGTGAAAATAAAGGTGGATAGCTCATGGAAATTCAGCTTTTTAGTCAGTGACAATCAGGGAAAAGTCAAGGAATTTGATATGTTGGGTTATAGAGTGGGAACCCTGATCTAAAAATTGTTTTTTATTCATTTAGTTAATCTCCGGGTCAGGTGGAGGCACTTTTAGTTTAGCTTAATATTGATCATCGAGTCAGAATAGACCAGTGATGGGCAAACTAGGTCCTTGAAGGCCAGTGTCCTACAAAGTTTACCTCCAACCCTAATCAAACACACCTGCCTATAGCTTTCTAGCGATCTTGAAGATGTTGATTAGTATTAGAGCAAAACTCTGCAGAAAACGGAGTTTGCCCATCCCTGGATTAGACCATTAGCATTTTACTGAGAAATGACCAAAGATGCCTTGCTACCATGATTTCTGAAAGACTATTCTGAAATTACTTATTTTGGTGCAGATCCTGAAGTCACTAGAATACACAGAAGTTAACCAATTTTCAAGATTTCCATAGTACAGCTGCAAAGATCTTTGATTACTACGCCAGAATGAGAGTATAGTTCCTATCCACATTGGCTTAGAAAATATCAACTTTTCATTTTCCACTGATCTTGGCACACAGTGTATCTACAAAAGTATCAAGCTTTAAATACAAAAATTATCAAAACTCTTTGGCCATTTTTGAGTGAGATGCTAATGGTCTAATCTGATACAATGATCTATGCTAAGCTAAGCTAAAAGTGCTTCAGCCAGACCTAGAGATCACCTGAATAGAATAAAAAATGGTAAAACTCAGCTGTTTAGCTCTTGGGGACTTGTAAAATGAGCCTATTTTTTGTAAAAAGTGGATTTTTTTTTTAATGATGTTTAGCACATTCTGCCTCCAGGTCCAAAGTGAATGTGTGTTTAGGGTTTCATTTCTAGGCACAAGTGGAATGTGTCTCCATTTCCTATTCATAAATGTTGAGTTTGTGATCTGTTGCAG
Seq C2 exon
GTCTGAGGACGTCCTGTCCTTAATGGGGAAGAAAACGGAGCATTACACTGCAGTTATAGTTGAGGACGGAAACTCCTACATAGGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077174:ENSDART00000111282:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PD(12.4=38.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]