RnoINT0121287 @ rn6
Intron Retention
Gene
ENSRNOG00000018574 | Qsox2
Description
quiescin sulfhydryl oxidase 2 [Source:RGD Symbol;Acc:1584720]
Coordinates
chr3:3677661-3678035:-
Coord C1 exon
chr3:3677930-3678035
Coord A exon
chr3:3677752-3677929
Coord C2 exon
chr3:3677661-3677751
Length
178 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
GGGTTGTCTTCTTCTGACAGGTC
3' ss Score
9.98
Exon sequences
Seq C1 exon
GACCTGACAGGGAGCTACGGACGGTCAGGCAGACAATGATCGACTTCCTGCAGAACCACACTGAGGGCTCCCGGCCTCCTGCATGCCCACCCCTGGATCCTATTCA
Seq A exon
GTGAGTAGCTCCATTGAAAGGTGCCCTGTGGGGAGCCCTGGTTCACCCCTCTCCCCAAGTTCCTGGTGCAGATTGGGCATGGTTTCTAAAATGTCAGTATACGTAGTAACTGGGGTACTGGCTTGCTGTAACAGCTTGTGATCATGGATGACACTGAAGGGTTGTCTTCTTCTGACAG
Seq C2 exon
GTCCAGTGACATCCTTTCCTTCATGGACAGCCACAGTGGCCAGTACCATGCTGTTGTATTTGAAAGCAACGGTTCTTATGTTGGACGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018574:ENSRNOT00000061735:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PD(10.9=33.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGACAGGGAGCTACGGAC
R:
TCTCGTCCAACATAAGAACCGT
Band lengths:
194-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]