MmuINT0130225 @ mm9
Intron Retention
Gene
ENSMUSG00000036327 | Qsox2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:MGI Symbol;Acc:MGI:2387194]
Coordinates
chr2:26080361-26080774:-
Coord C1 exon
chr2:26080669-26080774
Coord A exon
chr2:26080452-26080668
Coord C2 exon
chr2:26080361-26080451
Length
217 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
GTTTTTCTTTCTTCTGACAGGTC
3' ss Score
12.09
Exon sequences
Seq C1 exon
GACCTGACAGGGAGCTGCGGACAGTCAGGCAGACAATGATCGACTTCCTGCAGAACCATACTGAGGGCACCTGGCCTCCTGCATGCCCACCCCTGGACCCTATTCA
Seq A exon
GTGAGTAGCTGCATTGAAAGGTGGCCTGTGGGGCCCAGAGCATTGTGATAGTAGCCTGTGGCAAGTGGGCAGCCCTGGTCCATTCCTTTTTCCAAGTTGCCTGGTACAGTTTGGGCATGGTTTTTAAAATGTCTGTGTGTATAGTGACTGGGGTACTGGCATACTGTAACAGCTTATGATCATGGAGAGCACTGAAGGTTTTTCTTTCTTCTGACAG
Seq C2 exon
GTCCAGTGACATCCTTTCCTTCATGGATAGCCACAGTGGCCAATACCATGCTATTGTGTTTGAAAGCAATGGTTCTTATGTTGGACGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036327-Qsox2:NM_153559:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PD(10.9=33.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGACAGGGAGCTGCG
R:
CTCTCGTCCAACATAAGAACCA
Band lengths:
197-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: