HsaEX0051496 @ hg38
Exon Skipping
Gene
ENSG00000165661 | QSOX2
Description
quiescin sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr9:136219030-136224112:-
Coord C1 exon
chr9:136224007-136224112
Coord A exon
chr9:136223763-136223853
Coord C2 exon
chr9:136219030-136219164
Length
91 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTCCTCTTGAAAGGCC
3' ss Score
8.25
5' ss Seq
GAGGTACGG
5' ss Score
9.4
Exon sequences
Seq C1 exon
GACCTGACCGAGAGCTGCGAACAGTCAGACAGACGATGATTGACTTCCTGCAGAACCACACGGAAGGAAGCCGGCCCCCTGCCTGCCCGCGCCTAGACCCCATTCA
Seq A exon
GCCCAGTGATGTTCTTTCCCTTCTTGACAACCGTGGCAGCCATTACGTGGCTATTGTCTTTGAAAGCAACAGCTCCTACCTTGGACGGGAG
Seq C2 exon
CGTGAAGCCTCTGCGGGCCTTCTTTTCGTCTTATTTGAAGTCATTGCCGGATGTGAGGAAAAAATCGCTTCCCTTGCCTGAAAAGCCACACAAAGAAGAAAATTCAGAAATCGTGGTTTGGAGAGAATTTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165661_MULTIEX1-4/5=3-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=0.000 C2=0.122
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PD(10.8=33.3)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCTGCGAACAGTCAGAC
R:
CTTTTCAGGCAAGGGAAGCGA
Band lengths:
182-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development