MmuEX6099673 @ mm10
Exon Skipping
Gene
ENSMUSG00000036327 | Qsox2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:MGI Symbol;Acc:MGI:2387194]
Coordinates
chr2:26222221-26225371:-
Coord C1 exon
chr2:26225149-26225371
Coord A exon
chr2:26224841-26224931
Coord C2 exon
chr2:26222221-26222366
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTTTCTTCTGACAGGTC
3' ss Score
12.09
5' ss Seq
GAGGTACCG
5' ss Score
8.5
Exon sequences
Seq C1 exon
AGTGAGCAGCGGTGCACCCAGGGTTGTGTGGATAGTGCTGCAGCCTTCACTGGCCTTGGCTCTGGGCTTGGGACAGACACCTAGAGCCACAGCCATGACCCAGGTTTTCTTGTGTAGGACCTGACAGGGAGCTGCGGACAGTCAGGCAGACAATGATCGACTTCCTGCAGAACCATACTGAGGGCACCTGGCCTCCTGCATGCCCACCCCTGGACCCTATTCA
Seq A exon
GTCCAGTGACATCCTTTCCTTCATGGATAGCCACAGTGGCCAATACCATGCTATTGTGTTTGAAAGCAATGGTTCTTATGTTGGACGAGAG
Seq C2 exon
GTGATCTTAGATTTGATTCCATATGAAAACATCATGGTGAGCCGAGCACTGGATACGGACAAAGCATTTCTGGGGACACTTGGCATTACTTCAGTGCCTTCCTGTTACTTGATTTACCCAAATGGGTCTCATGGACTGGTTAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036327-'8-7,'8-5,9-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PD(10.9=33.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCCATGACCCAGGTTTT
R:
GCTCGGCTCACCATGATGTTT
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types