RnoEX6015943 @ rn6
Exon Skipping
Gene
ENSRNOG00000018574 | Qsox2
Description
quiescin sulfhydryl oxidase 2 [Source:RGD Symbol;Acc:1584720]
Coordinates
chr3:3676100-3678035:-
Coord C1 exon
chr3:3677930-3678035
Coord A exon
chr3:3677661-3677751
Coord C2 exon
chr3:3676100-3676245
Length
91 bp
Sequences
Splice sites
3' ss Seq
GGGTTGTCTTCTTCTGACAGGTC
3' ss Score
9.98
5' ss Seq
GAGGTACCA
5' ss Score
6.43
Exon sequences
Seq C1 exon
GACCTGACAGGGAGCTACGGACGGTCAGGCAGACAATGATCGACTTCCTGCAGAACCACACTGAGGGCTCCCGGCCTCCTGCATGCCCACCCCTGGATCCTATTCA
Seq A exon
GTCCAGTGACATCCTTTCCTTCATGGACAGCCACAGTGGCCAGTACCATGCTGTTGTATTTGAAAGCAACGGTTCTTATGTTGGACGAGAG
Seq C2 exon
GTGATCTTAGATTTGATTCCATATGACAACATCATGGTGAGCCGAGCACTGGATACGGACAAAGCATTTCTGGGGACCCTTGGCATTTCGTCAGTTCCTTCCTGTTACTTGATTTACCCAAATGGGTCTCATGGTCTGGTTAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018574-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PD(10.9=33.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTTCCTGCAGAACCACAC
R:
AGGAAGGAACTGACGAAATGCC
Band lengths:
169-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]