GgaEX1047587 @ galGal4
Exon Skipping
Gene
ENSGALG00000001758 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr17:8025714-8027718:+
Coord C1 exon
chr17:8025714-8025822
Coord A exon
chr17:8026013-8026103
Coord C2 exon
chr17:8027573-8027718
Length
91 bp
Sequences
Splice sites
3' ss Seq
GCTAAATCTTTTCTTAAAAGGTC
3' ss Score
6.04
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
CAGGAGCCGATCGTGAGCTGCAAACAGTTCGCCAGATGATGATTGACTTCTTGCAGAACCATTCCCAAGAGTCAAAACCTCCAGCTTGCCCACCATTGGATCCAGTTTT
Seq A exon
GTCCAGTGATGTTACTTCTCTCTTTGACGAGAAAGCCCCTCATTATACTGCCATTGTGGTTGAAAGTAATAACTCCTACATTGGACGAGAG
Seq C2 exon
GTTATCTTAGATTTGATCCCATATGAAAACATTGTTGTGAAGAGAGCACTGAATTTTGATAAGCCTTTCCTAGAGAAACTTGGGATTACCTCAGTCCCTTCGTGCTACCTGATGCATCCTAATGGATCACATGGGTTAGTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001758-'6-8,'6-5,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PD(10.1=29.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAACCATTCCCAAGAGT
R:
AGGTAGCACGAAGGGACTGAG
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]