DreEX6014202 @ danRer10
Exon Skipping
Gene
ENSDARG00000077174 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr5:63610408-63617921:+
Coord C1 exon
chr5:63610408-63610513
Coord A exon
chr5:63613255-63613345
Coord C2 exon
chr5:63617776-63617921
Length
91 bp
Sequences
Splice sites
3' ss Seq
GAGTTTGTGATCTGTTGCAGGTC
3' ss Score
8.6
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAGCTGACAGAGAGCTTCAGACAGTCAGGCAGTTGATGGTGAACTTCATCCAGAACCACACTAGACAAGACTGGCCTGTGGGCTGCCCTCCGCTTCACCCTGCCAG
Seq A exon
GTCTGAGGACGTCCTGTCCTTAATGGGGAAGAAAACGGAGCATTACACTGCAGTTATAGTTGAGGACGGAAACTCCTACATAGGGAGAGAG
Seq C2 exon
GTAATTTTGGACCTGATGCCATATGAGGGTTTGGTGGTGAAGAGAGCTCTGAGCTCAGACCAACTTCTAATGGACAAGCTGGGGATTAGTTCAGTTCCCTCGGCGTACCTTTTCCAGCCCAACGGCACACACACTGTTTTGAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077174-'5-8,'5-6,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PD(12.4=38.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGACAAGACTGGCCTGTGGG
R:
CCGTTGGGCTGGAAAAGGTAC
Band lengths:
170-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]