BtaEX6047124 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011129 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr11:103757580-103758796:-
Coord C1 exon
chr11:103758691-103758796
Coord A exon
chr11:103758466-103758556
Coord C2 exon
chr11:103757580-103757725
Length
91 bp
Sequences
Splice sites
3' ss Seq
AGGCTCTGTCTTCTTAAAAGGCC
3' ss Score
5.51
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GGCCCGACCGAGAACTGCAGACAGTGAGGCGGACCATGATCAACTTCCTGCAGAACCACACAGACGGCAATCGGCCCCCCGCCTGCCCGTCCTTGGACCCCATCAG
Seq A exon
GCCCAGTGACGTCCTTTCACTCATCGACAAGCGAGGTGACCGGTACGTGGCTGTGCTGTTGGAAGATGACAGCTCCTACGTCGGACGCGAG
Seq C2 exon
GTGATCTTGGACCTGATTCCATACGAGAGCATCGAGGTGAGGCGGGCGCTGGGTTCCGACACAGCCTTCCTGCAGAAGCTCGGCGTGCCCTCCCTTCCCTCCTGCTACCTGATCTACCCGAACGGGTCGCACGGACCAGTCACCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011129-'9-8,'9-6,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PD(10.8=33.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACCACACAGACGGCAATC
R:
CCCGTTCGGGTAGATCAGGTA
Band lengths:
181-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]