GgaINT1023226 @ galGal4
Intron Retention
Gene
ENSGALG00000006271 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chrLGE22C19W28_E50C23:339146-339579:+
Coord C1 exon
chrLGE22C19W28_E50C23:339146-339263
Coord A exon
chrLGE22C19W28_E50C23:339264-339448
Coord C2 exon
chrLGE22C19W28_E50C23:339449-339579
Length
185 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
3' ss Seq
ATTCCTCTTCTGTTTTCTAGGTC
3' ss Score
12
Exon sequences
Seq C1 exon
GGAAACGAATCCATAGTGGCAAAGACGACTCTCATGGTTCCCAGTGATGGTGGTCCTATTGAAGCCATCTCTACGATCCAGACTGTGCCTTACAGCCTGAGAAGCCAGAGGAAGAGTG
Seq A exon
GTAGGTGTCAGCCTGTTGTCCTAGTCCTGAATCACTTAGCAGGCTGAAGGGTGTCCTGTCATTGCAGTTTCCTATGCTCCACAACTTAAGCTGCTGCCTCTGATCTGTAGTGCGTTTTCTCTGGAGCAAGGGACGCACATGGGAACAGTTTCCCATCTAGTCAACATTCCTCTTCTGTTTTCTAG
Seq C2 exon
GTCCTTTGCAGCCTTGGAGCAGTGAGACAAGCTTAGGCTCTAAGCAGGTGGAATCCAAACCAGAGAGTAATGTTTCTAGCACCCCACAGAGCAACGGGGGAGTGAGGCTGCATGACTTTGTCTCAAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006271:ENSGALT00000010135:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=NA C2=0.841
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=PU(11.5=13.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACGAATCCATAGTGGCA
R:
TGAGACAAAGTCATGCAGCCT
Band lengths:
243-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]