HsaINT1028740 @ hg38
Intron Retention
Gene
ENSG00000161800 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chr12:49999141-49999733:-
Coord C1 exon
chr12:49999616-49999733
Coord A exon
chr12:49999272-49999615
Coord C2 exon
chr12:49999141-49999271
Length
344 bp
Sequences
Splice sites
5' ss Seq
CAGGTCCAT
5' ss Score
0.82
3' ss Seq
AAAAGTTGCTTGTTTTCTAGGTA
3' ss Score
6.81
Exon sequences
Seq C1 exon
GGGAATGAATCCATAGTTGCAAAAACTACAGTGACTGTTCCCAATGATGGCGGGCCCATCGAAGCTGTGTCCACTATTGAGACTGTGCCATATTGGACCAGGAGCCGAAGGAAAACAG
Seq A exon
GTCCATTGAATTTGTGACTAAACTGGCCTGTGTAAAACAACTAGCAAAATTTTGGAGAGTTGGTTTCTTAGAACCCTCTGGAGGCGGGGATTGGATGTATTGGGTAGTTTCTTACTGCTGCATACCGAGGACCAGAGAACTGCTTGTGTCATGCTTTACCTTTGAATTGCTAGCCCACTGGCATAACTTTAGTTTTTCTTGAAACTGTTTTTTTACATAGCCATTAGTTCTCACTTTTGGCTATGATAACAGATTACTGTTTATCTCCCAGTTAAAATTGGAGCTAAAATTTAGAAGGAGCAAAATACTTAAGACACAAAGCTTAAAAGTTGCTTGTTTTCTAG
Seq C2 exon
GTACTTTACAACCTTGGAACAGTGACTCCACCCTGAACAGCAGGCAGCTGGAGCCAAGAACTGAGACAGACAGTGTGGGCACGCCACAGAGTAATGGAGGGATGCGCCTGCATGACTTTGTTTCTAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161800:ENST00000312377:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.713 A=NA C2=0.838
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=PU(11.5=13.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAAACTACAGTGACTGTTCCC
R:
GTCTTAGAAACAAAGTCATGCAGGC
Band lengths:
230-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains