RnoINT0123527 @ rn6
Intron Retention
Gene
ENSRNOG00000049033 | Racgap1
Description
Rac GTPase-activating protein 1 [Source:RGD Symbol;Acc:1305912]
Coordinates
chr7:141288008-141288992:-
Coord C1 exon
chr7:141288875-141288992
Coord A exon
chr7:141288136-141288874
Coord C2 exon
chr7:141288008-141288135
Length
739 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
3' ss Seq
AAATTTGATTGTTTTTCTAGGAC
3' ss Score
7.93
Exon sequences
Seq C1 exon
GCAAATGAATCAATAGTTGCTAAAACAACGGTGACTGTCCCCAGTGACGGTGGGCCCATTGAAGCCGTGTCCACTATCGAGACATTGCCGTGTTGGACCAGGAGTCGAGGGAAATCAG
Seq A exon
GTCTGGCAGATATGTAGCTACATTTCCTCCTTATAGCCACAGGGCTGGCTCTGGTGACAGCTACAGTCTGCTCACCTAGAAGCCGAGACGGGAAGTGAGAGTTGCTGGGTAGCCTAGACTTCATACTGACTCAAGACCAGTCCTTGGCATACATGGTGAGACCAAAAAAGAGGGGCTGGAGAGACGGCTCCGCCCAGCTGCTCTCATAGAAGACATAGGTTTAATTCCTAGCACCTATAGGGTGGCTACAACCATCTGTAACTCCAGGCCTAAGGAATCTGACGCACGCTTCTGGTCTCCTTGGCACTACACTGCACCTATGGTGCAGATTCATTCAGACAAACGCCCATACACATAAATAAAGTCTCAAAAAAATTTTTAAAAAAGGAAAAAAGCACTGGTTCCAATTGAGAGTTAGTTGGTTTCTGCGAATCCTCTTGAGACATGGACATGCTGGGTAGGGAAGTTCTTATGAGCGCCTGCCCGATGCTACCCCGAGTAGTGTCTGCTGTCCTTTACTCTGTGGGGCTGGTCAGTCTGAGTGCACCACTCGTGGAGAATTTTAGCTTTTCTTGGAAACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTACTACTATTAAAAGTGAAGTTAAAAAGAGAAAATTAAAATAGGATTAAAATTTATAAGGACGAACACTTTTATGACAAAAGTTTAAATTTGATTGTTTTTCTAG
Seq C2 exon
GACCTTTACAACCTGTGAACAGCGACTCTGCTCTCAATAGCAGGCCACTGGAGCCAAGAACTGAGACAGACGCTGTGGGCACACCCCAGAATAATGGCATGCGCTTACACGACTTTGTCTCAAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049033:ENSRNOT00000071885:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.837
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=PU(11.5=14.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCTAAAACAACGGTGACTGT
R:
AGACAAAGTCGTGTAAGCGCA
Band lengths:
223-962
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]