GgaINT1024399 @ galGal4
Intron Retention
Gene
ENSGALG00000012438 | SBF1
Description
SET binding factor 1 [Source:HGNC Symbol;Acc:HGNC:10542]
Coordinates
chr1:558051-560484:-
Coord C1 exon
chr1:560374-560484
Coord A exon
chr1:558157-560373
Coord C2 exon
chr1:558051-558156
Length
2217 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CCTCCTGCATTCTCTTGCAGCGG
3' ss Score
11.06
Exon sequences
Seq C1 exon
AACAGCCTGGGCTTGATCTACACCATCTATGTAGACGGGCTGAACGTGTCCCTGGAGAACGTCATTGGGAACTTGCTGACGTGCACCATCCCCATCACCGGTGGAGCCCAG
Seq A exon
GTGGGTGCCCCCCAACCTCCCTGCACTGCCTCATCCTCAGCTCCGTGGCGTGGGGCAGAGCCACGCTGCGTGGCTGCATTCTGCTCCTGCCTGCCTGAGCCTCCTGCAGGCAGCAGCTCGCTGCACCAGCTGCTGGGGGGCTGCTGCATGCTCTGCTGCTGGCAGGGCCTGGCTCGTGCAGGCAGCACCTTTGCGAGTGCTGTGGAGCAGAACAATGCAGCTCCATCAGCTGGAGCAGCTCAGCCCCTGGAGTGGCTGAGAGCACCTCGCTGTGGGTCAGCAGCTTTGTCCCTTCCCCCCCTCTCCCCCCAAGAGCTGCATAGATCAGTTCATGCTGTGCAAACCCCTGCTGTGGTCCGTGGTCTCCCTGCATTGGAGGGGTCTTGCTGCTCTGCTTGGGCCCATCTGAGCACACAGAGCATTGCTCTGGGTCAGCAGGCACAGGCTGTGCGTGCCTGTGGTCCCGAGGTTTGAGCACAGACTTGGATAGGAAGGACATTTGGGGCATAGGTAAATGGATGAAACATTGGCTGTGTCTTCTGAGCACTTGGAACCAATGGTGTGTGTTTCAGTGTCCAAGTAGTCCTAAAACAGAGGAGCAGAACCAAGTGAGCTCCCATCCTGAAGACATTGATGCATTTTCACACTCCTCTGTCCAAACTTCCCAAGCTTTCTGAGCATTAAACATTAAAGCAGCACAGCAGATGAGTTCCCACTTAGATATCAAACCTGACTCTTGGAAAAGAAGGCAGAAATGAGGTTGGTAGCTTCTGGTTCTGGTGAGGAAAGTGCTCCTGCTCCAGGTGGGCAGCAGGTGGGTGAGTGATGGAGATGGGAGAGGTGGGCAGCACCCAGGCAGACCCTCTCACAGGAGGTGTTTGAAGGCAGCAGCACAGCCCCTCTGGAGCTGTTCTGCCACTCTGACACTTGGATAGCAGCTGTGGATGTGGCTGTGGATGTGGCACGTGTCCCTGCACTCAGCCAAAGGCAGCACATGGGGGGAAGGAACCTGGCAGCACTGCAGCTCCGTGCCTTCAGGCAGAGGCTCTCCCCACTGCCGAGCCCTGGGACCCCAAGGGGGGGTTTTTGCTCCCTGTCCCCATGCAGGCTGTTGGTTTGGGTGCTTTGTGCCTGGGTGCAGGCAGTGCATTCAGGCTGACCTCGTGCCCCAGCGCTCTGGATCAGTGCTGGCTCTGGGGCTGGCTGCCAGTCACACCTGGTGCTCTGGAGAAGCAGGCGAGCCACCGCTGAGCTCGTGGCCGTGCCAGGCTGGGTGTGGGCACCCAACAACATCCCACCCCATCTGGTTCCTCCCGGCTGGAGCCTACACACAGCAGGAGGAAGGCAGCGAGCTGCGCTTTGGGCACTGCCATTTATCACCTCCCCCTTCTGGCAGGATCCATGCGTGCCATGGGGACACGCAGCACGCCGCGGGGAGGACGGTGTGTTGGTGGCACTCCCCTCCCTGTGCTTTCCCTTTGCTCCCGCTGTGTCCAAACGCTCTTTCTCATTGTGGTGGTGGCTGCTTTGCTTTGTCTGTGTGCACCTCTCCTCCTCTGAGAGCGCTGCTCCCCGCTTTGTGCCTTCGTCCCCCCCGCCCCTATCTGGCTGCGTTTGTGCCTTTCTAACCGACTGTGCTATCTTTGTCTGTCTCTATCTCAGCCTGACGCGGACGACGAAGCAGTGGTACGCACACCTTTTCTTTCTGGGGTCTGTGTCCTCGTTAGCCCCCTCTCTTCCTGCTGTCGAAGGGTCGTGCAAGCAGCTCTGGTGCTGCCACATCCACGGGGCTGGTTCCTGCCCCGTGGCATCGCTTCCCCATGGTTAGGAGGCCCAGCTTGCTGCTTGGGTGCAGCTCAGGGTGTTGGCTCTGCCCAGCCAGAAGCCTTTATTGGGAGCAGCCCCCTGGGCCCACAGGGCTGAGCAGGGAGATGGGGCGCACGGCCAAACTTACTGCAGAGCAGCACAGCCCTGGAGAAGTGCTCATTGAGCCAGCGCTGCCCTCGTGTCTCTGGAGAGAGGCCGGGGACCTGCAGGCATCCCAGTGCTGCAGTTTGGAGAAAAACTACCCAGGAAAAGAAGAGCTGAGGCTGTGCCTGCTGTGCCCCAGCCCTGTCCTGGAGGGGCACGGGGCTGCTTCTTGGGCACTGTGGTCCTGGGTCCTCGTGCTGGCCCCTTGCTGAGTGCCACCCCATCACCTCCTGCATTCTCTTGCAG
Seq C2 exon
CGGACGATCTCGCTGGGCGCAGGGGACAGGCAGGTGATCCAGACACCCATCAATGACTCGCTTCCCGTCAGCAGCTGCAGTGTGGCTCTGCTCTTCCGGCAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012438:ENSGALT00000020337:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(19.7=100)
A:
NA
C2:
PF0214116=DENN=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]