RnoINT0130907 @ rn6
Intron Retention
Gene
ENSRNOG00000008392 | Sbf1
Description
SET binding factor 1 [Source:RGD Symbol;Acc:1307090]
Coordinates
chr7:130279967-130281144:-
Coord C1 exon
chr7:130281034-130281144
Coord A exon
chr7:130280073-130281033
Coord C2 exon
chr7:130279967-130280072
Length
961 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TGGCCATTTTCTTTCCACAGAGA
3' ss Score
10
Exon sequences
Seq C1 exon
AATAGCCTTGGTCTCATCTATACCATCCATGTGGAAGGCCTGAACGTGAACCTGGAGAATGTGATTGGGAATCTGCTCACGTGCACCGTCCCCTTGGCAGGCGGGTCTCAG
Seq A exon
GTGGGTGGCCACAGGCCTTCCTGGTGCAGTCACAGGAGGCAGGGGTTGGGGTACCTGTGGGTACTGATAGTCTTGCTAGCTGAGTCAAGGCCTTCTGCTTTCAGTGCCAGCCTTTGCCATCTGCTCTTAGCCCTGTCTACTTATTTGGCTTCGTACCTGTACCTTTGGGCCTGCATTTTCCGTCTCTGTCCTCTTGATCATTGCGTATGTTCCTGTCACTGGCTGTTGTTATCCATGTATCTGTCTGCTTCCTATTCTGTGTCCTGTGTCTAATGGTGTCTCTCTGTCTGTCTGTCCTGTGCAGCTGGACTCTGTTGAGGAAGGAGCGGTATGGATTCTTTGTTTCTTCTGCCCACTCAGGCCCTGCCCCGACCCAGAGCACAGACATCCCCCTTTACCTTGAGTTTTCTCTGCAGCGCTGCTCAGCCAACAGAGGCTGAGTGTGACCTATCCCTCAGGTCATCTAAACCAGTCCCATCTCAAGATCTGTCAGCTCACCTGGAGCCAAGTGCTCAGACCTGATCCGGCTCACTATACTGCTAAGCTCTGGCCATTTTCTTTCCACAGAGAACCATCTCTTTGGGGGCTGGTGACCGGCGTATGTTCCTGTCACTGGCTGTTGTTATCCATGTATCTGTCTGCTTCCTATTCTGTGTCCTGTGTCTAATGGTGTCTCTCTGTCTGTCTGTCCTGTGCAGCTGGACTCTGTTGAGGAAGGAGCGGTATGGATTCTTTGTTTCTTCTGCCCACTCAGGCCCTGCCCCGACCCAGAGCACAGACATCCCCCTTTACCTTGAGTTTTCTCTGCAGCGCTGCTCAGCCAACAGAGGCTGAGTGTGACCTATCCCTCAGGTCATCTAAACCAGTCCCATCTCAAGATCTGTCAGCTCACCTGGAGCCAAGTGCTCAGACCTGATCCGGCTCACTATACTGCTAAGCTCTGGCCATTTTCTTTCCACAG
Seq C2 exon
AGAACCATCTCTTTGGGGGCTGGTGACCGGCAGGTCATTCAGACCCCACTGGTAGACTCACTGCCTGTCAGCCGCTGTAGTGTAGCCCTGCTCTTCCGCCAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008392:ENSRNOT00000072955:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(19.7=100)
A:
NA
C2:
PF0214116=DENN=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCTTGGTCTCATCTATACCA
R:
CAGCTGGCGGAAGAGCAG
Band lengths:
214-1175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]