GgaINT1024592 @ galGal4
Intron Retention
Gene
ENSGALG00000011945 | SCRN2
Description
secernin 2 [Source:HGNC Symbol;Acc:HGNC:30381]
Coordinates
chr27:3895785-3896597:+
Coord C1 exon
chr27:3895785-3895962
Coord A exon
chr27:3895963-3896073
Coord C2 exon
chr27:3896074-3896597
Length
111 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
3' ss Seq
TGTGTCCCTCACCCCACCAGGAG
3' ss Score
8.9
Exon sequences
Seq C1 exon
GTCTGTCTTCAAGCCCTTCGTCTTCGTGCCTGGCCTTAAGCCTGCGCCACAGGTGAGTTCTCCCACCTTCAGCGACGACCCCGCCAAGAAGGTGCCACGCTTCCAGAGCACGGTCGATCGGAGGCACGAGCTCTACCGCCGGCACCAGGCAGCGCTGGAGCTGATGGAGAAGGACCAG
Seq A exon
GTAGCACCGAGCCCTTCCTCACGGCCCTCGTGCTGTCCCACAGCAATGTGGGAGGCAGTGGGATGCCCTGAAGGTGCCCATCCTCAGCCTTTGTGTCCCTCACCCCACCAG
Seq C2 exon
GAGCGGGGCCAGGAGCTCCTGCAGACGCTGCGGGACCTGGAGAAGCAGGGCCTGGAGGCGGTGAATGCGCTGCTGGCGGGGAACGTGGCCCCAAAGCCAGAGGAGCTGGCCGAGCTCTTCTTCGACTGCGTGGACGCAGAGATGAAGTTTTACAAATAAACCCCGTGCAGGTGTGTTAGGAGGGGAGAGGAGCTGAGGTCGGGCTCCAGCTCAGATCCCACAGCGTTGTTCCCACCCGGGGGTGAGAAACCCTTCCTGGTGCCCTGCCCTGCTTCCTCGCCTCCTCTCCTTTTGGAGCTGTGGAGGGGAATGGTTCCACCAGCACCTTCAGCCCTGAGCAGTCAATCAGTGCTTGTGGGGGTGGCTGTGGTGCGGAAGGGGGCGCAGAGAAGGGGTGGGGTTCCCTTTCTCAGCTTGGCACGTTGTTTCCCTGCTCAGCCCCTCAGCAGAGGACGCAGCTGCTGGCTGCAGGGCTCCGTGTCAGACAGAGATCGATGTAAGAATAAAGAGGCTTTAATTCCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011945:ENSGALT00000019483:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=NA C2=0.135
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGATGGAGAAGGACCA
R:
AACAACGCTGTGGGATCTGAG
Band lengths:
252-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]